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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107924092   putative pre-16S rRNA nuclease 
 ghi-r.1   107945540   putative pre-16S rRNA nuclease 
 ath-u.5   AT1G12244   Polynucleotidyl transferase, ribonuclease H-like superfamily protein 
 bra-r.6   103843143   putative pre-16S rRNA nuclease 
 bna-r.1   106414972   uncharacterized LOC106414972 
 bna-r.1   106415019   putative pre-16S rRNA nuclease 
 cit-r.1   102607908   hypothetical protein 
 gma-u.5   100810356   putative pre-16S rRNA nuclease 
 vvi-u.5   100247884   uncharacterized LOC100247884 
 ppo-u.5   18098331   uncharacterized LOC18098331 
 mtr-u.5   25491693   putative pre-16S rRNA nuclease 
 mtr-u.5   120578389   uncharacterized LOC120578389 
 mtr-u.5   112419181   putative pre-16S rRNA nuclease 
 sly-u.5   101244120   uncharacterized LOC101244120 
 sot-r.1   102580285   putative pre-16S rRNA nuclease 
 nta-r.1   107791442   uncharacterized LOC107791442 
 nta-r.1   107762186   uncharacterized LOC107762186 
 osa-u.5   4349344   uncharacterized LOC4349344 
 zma-u.5   100283107   holliday junction resolvase 
 hvu-r.1   123438507   putative pre-16S rRNA nuclease 
 sbi-r.1   8058742   putative pre-16S rRNA nuclease 
 bdi-r.1   100825620   putative pre-16S rRNA nuclease 
 cre-r.1   CHLRE_09g409951v5   uncharacterized protein 

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Top 50 coexpressed genes to 107924092 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107924092 (ghi-r.1 coexpression data)

CoexMap"107924092"


ghiLOC107924092 | Entrez gene ID : 107924092    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma hvu sbi bdi cre tae
Paralog 2 1 1 2 1 1 1 1 3 1 1 2 1 1 1 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000967 [list] [network] rRNA 5'-end processing  (10 genes)  IEA  
GO CC
GO MF
Protein XP_016709861.1 [sequence] [blastp]
XP_016709879.1 [sequence] [blastp]
XP_016709888.1 [sequence] [blastp]
XP_040938661.1 [sequence] [blastp]
XP_040938662.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  nucl 2  (predict for XP_016709861.1)
chlo 9,  nucl 1  (predict for XP_016709879.1)
chlo 9,  nucl 1  (predict for XP_016709888.1)
chlo 9,  nucl 1  (predict for XP_040938661.1)
cyto 4,  chlo 3,  mito 1,  nucl 1,  plas 1,  extr 1,  cyto_mito 1,  nucl_plas 1  (predict for XP_040938662.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_016709861.1)
chlo 8  (predict for XP_016709879.1)
chlo 8  (predict for XP_016709888.1)
chlo 8  (predict for XP_040938661.1)
other 8,  chlo 3  (predict for XP_040938662.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107924092
ghi-r.1
for
107945540
ath-u.5
for
AT1G12244
bra-r.6
for
103843143
bna-r.1
for
106414972
bna-r.1
for
106415019
cit-r.1
for
102607908
gma-u.5
for
100810356
vvi-u.5
for
100247884
ppo-u.5
for
18098331
mtr-u.5
for
25491693
mtr-u.5
for
120578389
mtr-u.5
for
112419181
sly-u.5
for
101244120
sot-r.1
for
102580285
nta-r.1
for
107791442
nta-r.1
for
107762186
osa-u.5
for
4349344
zma-u.5
for
100283107
hvu-r.1
for
123438507
sbi-r.1
for
8058742
bdi-r.1
for
100825620
cre-r.1
for
CHLRE_09g409951v5


Ortholog ID: 9899
Species ghi ghi ath bra bna bna cit gma vvi ppo mtr mtr mtr sly sot nta nta osa zma hvu sbi bdi cre
Symbol LOC107924092 LOC107945540 AT1G12244 LOC103843143 LOC106414972 LOC106415019 LOC102607908 LOC100810356 LOC100247884 LOC18098331 LOC25491693 LOC120578389 LOC112419181 LOC101244120 LOC102580285 LOC107791442 LOC107762186 LOC4349344 LOC100283107 LOC123438507 LOC8058742 LOC100825620 CHLRE_09g409951v5
Function* putative pre-16S rRNA nuclease putative pre-16S rRNA nuclease Polynucleotidyl transferase, ribonuclease H-like superfamily protein putative pre-16S rRNA nuclease uncharacterized LOC106414972 putative pre-16S rRNA nuclease hypothetical protein putative pre-16S rRNA nuclease uncharacterized LOC100247884 uncharacterized LOC18098331 putative pre-16S rRNA nuclease uncharacterized LOC120578389 putative pre-16S rRNA nuclease uncharacterized LOC101244120 putative pre-16S rRNA nuclease uncharacterized LOC107791442 uncharacterized LOC107762186 uncharacterized LOC4349344 holliday junction resolvase putative pre-16S rRNA nuclease putative pre-16S rRNA nuclease putative pre-16S rRNA nuclease uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00440 Phosphonate and phosphinate metabolism 3
ghi00564 Glycerophospholipid metabolism 3
ghi00565 Ether lipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00440 Phosphonate and phosphinate metabolism 3
ghi00564 Glycerophospholipid metabolism 3
ghi00565 Ether lipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00240 Pyrimidine metabolism 2
sbi01232 Nucleotide metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107924092 107945540 3766708 103843143 106414972 106415019 102607908 100810356 100247884 18098331 25491693 120578389 112419181 101244120 102580285 107791442 107762186 4349344 100283107 123438507 8058742 100825620 66054878
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