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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107924641   transcription factor ICE1-like 
 ath-u.5   ICE1   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   SCRM2   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 gma-u.5   ICEE   transcription factor ICE1-like 
 gma-u.5   ICE4   inducer of CBF expression 4 
 gma-u.5   ICE2   inducer of CBF expression 2 
 vvi-u.5   100265294   transcription factor ICE1 
 vvi-u.5   100245749   transcription factor ICE1 
 vvi-u.5   100245461   transcription factor ICE1 
 ppo-u.5   7457576   transcription factor ICE1 
 ppo-u.5   7454596   transcription factor ICE1 
 mtr-u.5   25491140   transcription factor ICE1 
 mtr-u.5   11440995   transcription factor SCREAM2 
 sly-u.5   101266110   transcription factor ICE1 
 sly-u.5   ICE1a   transcription factor ICE1-like 
 osa-u.5   4326959   transcription factor ICE1 
 osa-u.5   4350609   transcription factor ICE1 
 zma-u.5   103652960   transcription factor SCREAM2 
 zma-u.5   103648024   transcription factor SCREAM2 
 zma-u.5   100193144   uncharacterized LOC100193144 

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Top 50 coexpressed genes to 107924641 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107924641 (ghi-r.1 coexpression data)

CoexMap"107924641"


ghiLOC107924641 | Entrez gene ID : 107924641    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 2 3 3 2 2 2 2 3 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (4318 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0046983 [list] [network] protein dimerization activity  (1206 genes)  IEA  
GO:0043565 [list] [network] sequence-specific DNA binding  (1947 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (3140 genes)  IEA  
Protein NP_001314170.2 [sequence] [blastp]
NP_001386777.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1,  cysk 1  (predict for NP_001314170.2)
nucl 6,  chlo 2,  extr 1,  pero 1  (predict for NP_001386777.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001314170.2)
chlo 6  (predict for NP_001386777.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107924641
ath-u.5
for
ICE1
ath-u.5
for
SCRM2
gma-u.5
for
ICEE
gma-u.5
for
ICE4
gma-u.5
for
ICE2
vvi-u.5
for
100265294
vvi-u.5
for
100245749
vvi-u.5
for
100245461
ppo-u.5
for
7457576
ppo-u.5
for
7454596
mtr-u.5
for
25491140
mtr-u.5
for
11440995
sly-u.5
for
101266110
sly-u.5
for
ICE1a
osa-u.5
for
4326959
osa-u.5
for
4350609
zma-u.5
for
103652960
zma-u.5
for
103648024
zma-u.5
for
100193144


Ortholog ID: 1865
Species ghi ghi ath ath bra bra bna bna cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae hvu sbi sbi bdi bdi
Symbol LOC107911744 LOC107949636 ICE1 SCRM2 LOC103846282 LOC103875273 LOC106382368 LOC106360369 LOC102630264 LOC102620321 LOC100804797 ICEE LOC100265294 LOC100245461 LOC7457576 LOC7454596 LOC11440995 LOC25491140 LOC101266110 ICE1a LOC102589311 LOC102582692 LOC107831628 LOC107798349 LOC4326959 LOC4350609 LOC103648024 LOC103652960 LOC123162127 LOC123445315 LOC8059393 LOC8064787 LOC100826163 LOC100827768
Function* transcription factor ICE1 transcription factor ICE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor ICE1 transcription factor ICE1 transcription factor SCREAM2-like transcription factor ICE1-like transcription factor ICE1-like transcription factor ICE1 transcription factor ICE1-like transcription factor ICE1-like transcription factor ICE1 transcription factor ICE1 transcription factor ICE1 transcription factor ICE1 transcription factor SCREAM2 transcription factor ICE1 transcription factor ICE1 transcription factor ICE1-like transcription factor ICE1-like transcription factor ICE1-like transcription factor ICE1-like transcription factor ICE1 transcription factor ICE1 transcription factor ICE1 transcription factor SCREAM2 transcription factor SCREAM2 transcription factor ICE1 transcription factor ICE1-like transcription factor ICE1 transcription factor SCREAM2 transcription factor SCREAM2 transcription factor ICE1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00030 Pentose phosphate pathway 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 2
cit00010 Glycolysis / Gluconeogenesis 2
cit00052 Galactose metabolism 2
cit00500 Starch and sucrose metabolism 2
cit00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00053 Ascorbate and aldarate metabolism 2
gma00480 Glutathione metabolism 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 3
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly04075 Plant hormone signal transduction 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 4
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03020 RNA polymerase 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03060 Protein export 2
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03060 Protein export 2
nta03420 Nucleotide excision repair 2
nta04141 Protein processing in endoplasmic reticulum 2
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
zma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04016 MAPK signaling pathway - plant 2
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00940 Phenylpropanoid biosynthesis 3
bdi00480 Glutathione metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107911744 107949636 822287 837843 103846282 103875273 106382368 106360369 102630264 102620321 100804797 100805320 100265294 100245461 7457576 7454596 11440995 25491140 101266110 101248492 102589311 102582692 107831628 107798349 4326959 4350609 103648024 103652960 123162127 123445315 8059393 8064787 100826163 100827768
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