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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107924693   chorismate mutase 1, chloroplastic 
 ath-u.5   CM1   chorismate mutase 1 
 ath-u.5   CM3   chorismate mutase 3 
 gma-u.5   100797299   chorismate mutase 1, chloroplastic 
 gma-u.5   100793028   chorismate mutase 1, chloroplastic 
 vvi-u.5   100266283   chorismate mutase 02 
 ppo-u.5   7496001   chorismate mutase 1, chloroplastic 
 mtr-u.5   25495318   chorismate mutase 1, chloroplastic 
 mtr-u.5   11412814   chorismate mutase 3, chloroplastic 
 sly-u.5   101243843   chorismate mutase 1, chloroplastic 
 osa-u.5   4326889   chorismate mutase 1, chloroplastic 
 zma-u.5   100272431   Chorismate mutase 1 chloroplastic 
 zma-u.5   100279511   chorismate mutase 
 zma-u.5   103636619   chorismate mutase 3, chloroplastic-like 

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Top 50 coexpressed genes to 107924693 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107924693 (ghi-r.1 coexpression data)

CoexMap"107924693"


ghiLOC107924693 | Entrez gene ID : 107924693    
Species ghi ath gma vvi ppo mtr sly osa zma cre cit hvu bdi sot bra sbi tae nta bna
Paralog 1 2 2 1 1 2 1 1 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (103 genes)
ghi01230 [list] [network] Biosynthesis of amino acids (568 genes)
GO BP
GO:0046417 [list] [network] chorismate metabolic process  (26 genes)  IEA  
GO:0009073 [list] [network] aromatic amino acid family biosynthetic process  (98 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0004106 [list] [network] chorismate mutase activity  (10 genes)  IEA  
Protein XP_016710735.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 2,  mito 2  (predict for XP_016710735.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_016710735.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107924693

.
ath-u.5
for
CM1

.
ath-u.5
for
CM3

.
gma-u.5
for
100797299

.
gma-u.5
for
100793028

.
vvi-u.5
for
100266283

.
ppo-u.5
for
7496001

.
mtr-u.5
for
25495318

.
mtr-u.5
for
11412814

.
sly-u.5
for
101243843

.
osa-u.5
for
4326889

.
zma-u.5
for
100272431

.
zma-u.5
for
100279511

.
zma-u.5
for
103636619

.


Ortholog ID: 4248
Species ath ath gma sly osa zma zma bra bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol CM3 CM1 LOC100797299 LOC101243843 LOC4326889 LOC100272431 LOC103636619 LOC103837205 LOC103875095 LOC100266283 LOC7496001 LOC25495318 LOC11412814 LOC123079267 LOC123062152 LOC123444487 LOC107893865 LOC107911817 LOC106349127 LOC106397521 CHLRE_03g155200v5 LOC8079243 LOC102599197 LOC102623566 LOC100831943 LOC107800931 LOC107804390
Function* chorismate mutase 3 chorismate mutase 1 chorismate mutase 1, chloroplastic chorismate mutase 1, chloroplastic chorismate mutase 1, chloroplastic Chorismate mutase 1 chloroplastic chorismate mutase 3, chloroplastic-like chorismate mutase 1, chloroplastic chorismate mutase 1, chloroplastic chorismate mutase 02 chorismate mutase 1, chloroplastic chorismate mutase 1, chloroplastic chorismate mutase 3, chloroplastic chorismate mutase 1, chloroplastic chorismate mutase 1, chloroplastic chorismate mutase 1, chloroplastic-like chorismate mutase 3, chloroplastic chorismate mutase 1, chloroplastic chorismate mutase 1, chloroplastic chorismate mutase 1, chloroplastic uncharacterized protein chorismate mutase 3, chloroplastic chorismate mutase 1, chloroplastic chorismate mutase 1, chloroplastic chorismate mutase 1, chloroplastic chorismate mutase 1, chloroplastic chorismate mutase 1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00940 Phenylpropanoid biosynthesis 11
ath01230 Biosynthesis of amino acids 7
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
ath00360 Phenylalanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 4
gma00940 Phenylpropanoid biosynthesis 4
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 9
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
sly01200 Carbon metabolism 2
sly00010 Glycolysis / Gluconeogenesis 2
sly00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 6
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
osa01200 Carbon metabolism 3
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 9
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
zma01200 Carbon metabolism 4
zma00999 Biosynthesis of various plant secondary metabolites 2
zma00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
zma01230 Biosynthesis of amino acids 3
zma00230 Purine metabolism 3
zma00730 Thiamine metabolism 3
zma01232 Nucleotide metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 12
bra00360 Phenylalanine metabolism 5
bra00941 Flavonoid biosynthesis 5
bra00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 5
bra00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00750 Vitamin B6 metabolism 3
bra01240 Biosynthesis of cofactors 3
bra00740 Riboflavin metabolism 2
bra04142 Lysosome 2
bra00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 7
vvi00940 Phenylpropanoid biosynthesis 7
vvi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
vvi00941 Flavonoid biosynthesis 4
vvi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 12
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
ppo00071 Fatty acid degradation 3
ppo01200 Carbon metabolism 3
ppo00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00940 Phenylpropanoid biosynthesis 6
mtr01230 Biosynthesis of amino acids 5
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
mtr00020 Citrate cycle (TCA cycle) 2
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr02010 ABC transporters 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 12
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
tae00900 Terpenoid backbone biosynthesis 3
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00910 Nitrogen metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 12
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00910 Nitrogen metabolism 3
tae00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 10
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
hvu00270 Cysteine and methionine metabolism 4
hvu01240 Biosynthesis of cofactors 4
hvu00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 8
ghi00010 Glycolysis / Gluconeogenesis 6
ghi00260 Glycine, serine and threonine metabolism 6
ghi01230 Biosynthesis of amino acids 6
ghi00280 Valine, leucine and isoleucine degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
ghi01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00940 Phenylpropanoid biosynthesis 14
bna00360 Phenylalanine metabolism 7
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 7
bna00941 Flavonoid biosynthesis 7
bna00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00940 Phenylpropanoid biosynthesis 14
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 10
bna00941 Flavonoid biosynthesis 10
bna00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 10
bna00360 Phenylalanine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 12
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 11
sbi00940 Phenylpropanoid biosynthesis 4
sbi00360 Phenylalanine metabolism 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 10
sot01230 Biosynthesis of amino acids 10
sot00999 Biosynthesis of various plant secondary metabolites 2
sot00230 Purine metabolism 2
sot00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 8
bdi01200 Carbon metabolism 4
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
bdi00670 One carbon pool by folate 4
bdi00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 9
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
nta00941 Flavonoid biosynthesis 4
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
nta00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 9
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
nta00941 Flavonoid biosynthesis 4
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
nta00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843269 822573 100797299 101243843 4326889 100272431 103636619 103837205 103875095 100266283 7496001 25495318 11412814 123079267 123062152 123444487 107893865 107911817 106349127 106397521 5723071 8079243 102599197 102623566 100831943 107800931 107804390
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