ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107924921	ubiquitin domain-containing protein 1
ghi-r.1	107934694	ubiquitin domain-containing protein 1
ghi-r.1	121222313	ubiquitin domain-containing protein 1
ath-u.5	AT1G16960	Ubiquitin domain-containing protein
ath-u.5	AT1G53400	Ubiquitin domain-containing protein
bra-r.6	103871131	ubiquitin domain-containing protein 1-like
bra-r.6	103835977	ubiquitin domain-containing protein 2
bna-r.1	106451601	ubiquitin domain-containing protein 2
bna-r.1	106451600	ubiquitin domain-containing protein 2
bna-r.1	106387606	ubiquitin domain-containing protein 2-like
cit-r.1	102608330	uncharacterized LOC102608330
gma-u.5	100306399	ubiquitin-binding domain-containing protein
gma-u.5	100812911	ubiquitin domain-containing protein 1
vvi-u.5	100247989	uncharacterized LOC100247989
vvi-u.5	100267634	uncharacterized LOC100267634
ppo-u.5	18095450	uncharacterized LOC18095450
ppo-u.5	7455934	uncharacterized LOC7455934
mtr-u.5	11405273	ubiquitin domain-containing protein 1
sly-u.5	101246736	uncharacterized LOC101246736
sly-u.5	101247986	uncharacterized LOC101247986
sly-u.5	101257726	uncharacterized LOC101257726
sot-r.1	102584620	ubiquitin domain-containing protein 2-like
sot-r.1	102595144	ubiquitin domain-containing protein 1-like
sot-r.1	102583989	ubiquitin domain-containing protein 1-like
nta-r.1	107773890	uncharacterized LOC107773890
nta-r.1	107773971	uncharacterized LOC107773971
nta-r.1	107804303	uncharacterized LOC107804303
osa-u.5	4346799	uncharacterized LOC4346799
osa-u.5	4339404	uncharacterized LOC4339404
osa-u.5	4324429	uncharacterized LOC4324429
zma-u.5	100286222	uncharacterized LOC100286222
zma-u.5	100274665	uncharacterized LOC100274665
zma-u.5	100285566	ubiquitin domain containing 1
tae-r.2	123061992	ubiquitin domain-containing protein 2
tae-r.2	123070691	ubiquitin domain-containing protein 2
hvu-r.1	123398058	ubiquitin domain-containing protein 2-like
hvu-r.1	123440204	ubiquitin domain-containing protein 2-like
hvu-r.1	123448848	ubiquitin domain-containing protein 1-like
sbi-r.1	8068968	ubiquitin domain-containing protein 2
sbi-r.1	8069834	ubiquitin domain-containing protein 1
sbi-r.1	8055548	ubiquitin domain-containing protein 2
bdi-r.1	100827721	ubiquitin domain-containing protein 1
bdi-r.1	100841833	ubiquitin domain-containing protein 1
cre-r.1	CHLRE_12g538950v5	uncharacterized protein

Top 50 coexpressed genes to 107924921 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107924921 (ghi-r.1 coexpression data)

CoexMap"107924921"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_016710988.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 2, extr 1, golg_plas 1

(predict for XP_016710988.1)

Subcellular
localization
TargetP

other 8

(predict for XP_016710988.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107924921	ghi-r.1 for 107934694	ghi-r.1 for 121222313	ath-u.5 for AT1G16960	ath-u.5 for AT1G53400	bra-r.6 for 103871131	bra-r.6 for 103835977	bna-r.1 for 106451601	bna-r.1 for 106451600	bna-r.1 for 106387606	cit-r.1 for 102608330	gma-u.5 for 100306399	gma-u.5 for 100812911	vvi-u.5 for 100247989	vvi-u.5 for 100267634	ppo-u.5 for 18095450	ppo-u.5 for 7455934	mtr-u.5 for 11405273	sly-u.5 for 101246736	sly-u.5 for 101247986	sly-u.5 for 101257726	sot-r.1 for 102584620	sot-r.1 for 102595144	sot-r.1 for 102583989	nta-r.1 for 107773890	nta-r.1 for 107773971	nta-r.1 for 107804303	osa-u.5 for 4346799	osa-u.5 for 4339404	osa-u.5 for 4324429	zma-u.5 for 100286222	zma-u.5 for 100274665	zma-u.5 for 100285566	tae-r.2 for 123061992	tae-r.2 for 123070691	hvu-r.1 for 123398058	hvu-r.1 for 123440204	hvu-r.1 for 123448848	sbi-r.1 for 8068968	sbi-r.1 for 8069834	sbi-r.1 for 8055548	bdi-r.1 for 100827721	bdi-r.1 for 100841833	cre-r.1 for CHLRE_12g538950v5

Ortholog

Ortholog ID: 2050

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

ubiquitin domain-containing protein 1

Ubiquitin domain-containing protein

ubiquitin domain-containing protein 2

ubiquitin domain-containing protein 1

uncharacterized LOC102608330

ubiquitin-binding domain-containing protein

ubiquitin domain-containing protein 1

uncharacterized LOC100247989

uncharacterized LOC100267634

uncharacterized LOC18095450

uncharacterized LOC7455934

ubiquitin domain-containing protein 1

uncharacterized LOC101246736

uncharacterized LOC101247986

uncharacterized LOC101257726

ubiquitin domain-containing protein 2-like

ubiquitin domain-containing protein 1-like

uncharacterized LOC107773971

uncharacterized LOC107804303

uncharacterized LOC107807665

uncharacterized LOC4346799

uncharacterized LOC4339404

uncharacterized LOC4324429

uncharacterized LOC100286222

uncharacterized LOC100274665

ubiquitin domain containing 1

ubiquitin domain-containing protein 1

ubiquitin domain-containing protein 2-like

ubiquitin domain-containing protein 1-like

ubiquitin domain-containing protein 2

ubiquitin domain-containing protein 1

ubiquitin domain-containing protein 2

ubiquitin domain-containing protein 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2
ghi04016	MAPK signaling pathway - plant	2
ghi04626	Plant-pathogen interaction	2
ghi00592	alpha-Linolenic acid metabolism	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00740	Riboflavin metabolism	2
bra04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	3
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00510	N-Glycan biosynthesis	2
gma00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04136	Autophagy - other	3
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2
gma00510	N-Glycan biosynthesis	2
gma00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	4
ppo04517	IgSF CAM signaling	2
ppo05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00010	Glycolysis / Gluconeogenesis	2
ppo00071	Fatty acid degradation	2
ppo00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	4
mtr00510	N-Glycan biosynthesis	2
mtr00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01240	Biosynthesis of cofactors	5
sot00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
sot00051	Fructose and mannose metabolism	2
sot00520	Amino sugar and nucleotide sugar metabolism	2
sot00541	Biosynthesis of various nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00280	Valine, leucine and isoleucine degradation	4
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta01250	Biosynthesis of nucleotide sugars	2
nta00071	Fatty acid degradation	2
nta00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	2
nta00071	Fatty acid degradation	2
nta00280	Valine, leucine and isoleucine degradation	2
nta00310	Lysine degradation	2
nta00360	Phenylalanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04130	SNARE interactions in vesicular transport	3
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	3
zma04145	Phagosome	2
zma04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04136	Autophagy - other	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	5
zma04130	SNARE interactions in vesicular transport	4
zma04145	Phagosome	2
zma04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00600	Sphingolipid metabolism	4
tae04142	Lysosome	4
tae00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	4
tae00600	Sphingolipid metabolism	4
tae04142	Lysosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	4
hvu00600	Sphingolipid metabolism	2
hvu04142	Lysosome	2
hvu04148	Efferocytosis	2
hvu04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04016	MAPK signaling pathway - plant	2
hvu04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01230	Biosynthesis of amino acids	3
sbi00010	Glycolysis / Gluconeogenesis	2
sbi00710	Carbon fixation by Calvin cycle	2
sbi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	2
sbi04120	Ubiquitin mediated proteolysis	2
sbi04130	SNARE interactions in vesicular transport	2
sbi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	5
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

121222313

107917868

838267

841776

103835977

103868435

106451600

106407298

106451474

102608330

100306399

100812911

100247989

100267634

18095450

7455934

11405273

101246736

101247986

101257726

102584620

102595144

102583989

107773971

107804303

107807665

4346799

4339404

4324429

100286222

100274665

100285566

123103526

123111744

123398058

123440204

123448848

8068968

8069834

8055548

100827721

100841833

5718437

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Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	2	2	3	1	2	2	2	1	3	3	3	3	3	2	3	3	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107924921 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107924921 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**