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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107926438   probable prolyl 4-hydroxylase 4 
 ath-u.5   P4H2   P4H isoform 2 
 ath-u.5   AT5G18900   2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 
 gma-u.5   100820606   probable prolyl 4-hydroxylase 4 
 gma-u.5   100818794   prolyl 4-hydroxylase-like protein 
 gma-u.5   100796794   prolyl 4-hydroxylase subunit alpha-1-like 
 vvi-u.5   100245913   probable prolyl 4-hydroxylase 4 
 ppo-u.5   7469094   probable prolyl 4-hydroxylase 4 
 mtr-u.5   11417773   probable prolyl 4-hydroxylase 4 
 mtr-u.5   11437832   probable prolyl 4-hydroxylase 4 
 sly-u.5   101265933   probable prolyl 4-hydroxylase 4 
 sly-u.5   101244118   probable prolyl 4-hydroxylase 4 
 zma-u.5   100282945   uncharacterized LOC100282945 

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Top 50 coexpressed genes to 107926438 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107926438 (ghi-r.1 coexpression data)

CoexMap"107926438"


ghiLOC107926438 | Entrez gene ID : 107926438    
Species ghi ath gma vvi ppo mtr sly zma sbi nta bra osa cre cit hvu bdi sot tae bna
Paralog 1 2 3 1 1 2 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00330 [list] [network] Arginine and proline metabolism (150 genes)
GO BP
GO:0018401 [list] [network] peptidyl-proline hydroxylation to 4-hydroxy-L-proline  (56 genes)  IEA  
GO CC
GO:0005783 [list] [network] endoplasmic reticulum  (1428 genes)  IEA  
GO MF
GO:0031418 [list] [network] L-ascorbic acid binding  (49 genes)  IEA  
GO:0004656 [list] [network] procollagen-proline 4-dioxygenase activity  (56 genes)  IEA  
GO:0005506 [list] [network] iron ion binding  (898 genes)  IEA  
Protein XP_040957338.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 4  (predict for XP_040957338.1)
Subcellular
localization
TargetP
scret 8  (predict for XP_040957338.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107926438

.
ath-u.5
for
P4H2

.
ath-u.5
for
AT5G18900

.
gma-u.5
for
100820606

.
gma-u.5
for
100818794

.
gma-u.5
for
100796794

.
vvi-u.5
for
100245913

.
ppo-u.5
for
7469094

.
mtr-u.5
for
11417773

.
mtr-u.5
for
11437832

.
sly-u.5
for
101265933

.
sly-u.5
for
101244118

.
zma-u.5
for
100282945

.


Ortholog ID: 5288
Species ath ath gma gma sly sly zma bra bra vvi ppo mtr mtr ghi ghi bna bna sbi sot sot cit nta nta
Symbol AT5G18900 P4H2 LOC100818794 LOC100796794 LOC101265933 LOC101244118 LOC100282945 LOC103854470 LOC103845801 LOC100245913 LOC7469094 LOC11437832 LOC11417773 LOC107897647 LOC107916112 LOC106371848 LOC106371903 LOC8077026 LOC102591537 LOC102578911 LOC102620398 LOC107785810 LOC107815775
Function* 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein P4H isoform 2 prolyl 4-hydroxylase-like protein prolyl 4-hydroxylase subunit alpha-1-like probable prolyl 4-hydroxylase 4 probable prolyl 4-hydroxylase 4 uncharacterized LOC100282945 prolyl 4-hydroxylase 2 probable prolyl 4-hydroxylase 4 probable prolyl 4-hydroxylase 4 probable prolyl 4-hydroxylase 4 probable prolyl 4-hydroxylase 4 probable prolyl 4-hydroxylase 4 probable prolyl 4-hydroxylase 4 probable prolyl 4-hydroxylase 4 probable prolyl 4-hydroxylase 4 probable prolyl 4-hydroxylase 4 probable prolyl 4-hydroxylase 4 probable prolyl 4-hydroxylase 4 probable prolyl 4-hydroxylase 4 probable prolyl 4-hydroxylase 4 putative prolyl 4-hydroxylase 4 probable prolyl 4-hydroxylase 4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00330 Arginine and proline metabolism 3
ath00514 Other types of O-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00330 Arginine and proline metabolism 3
ath00514 Other types of O-glycan biosynthesis 3
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00330 Arginine and proline metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04626 Plant-pathogen interaction 4
gma00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00510 N-Glycan biosynthesis 2
sly00330 Arginine and proline metabolism 2
sly00520 Amino sugar and nucleotide sugar metabolism 2
sly01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 4
sly01240 Biosynthesis of cofactors 3
sly00230 Purine metabolism 2
sly01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03060 Protein export 4
zma04141 Protein processing in endoplasmic reticulum 3
zma04712 Circadian rhythm - plant 3
zma00561 Glycerolipid metabolism 2
zma00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00330 Arginine and proline metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00510 N-Glycan biosynthesis 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
vvi00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00330 Arginine and proline metabolism 2
mtr00190 Oxidative phosphorylation 2
mtr04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 2
ghi00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 2
ghi00240 Pyrimidine metabolism 2
ghi00410 beta-Alanine metabolism 2
ghi00770 Pantothenate and CoA biosynthesis 2
ghi00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00330 Arginine and proline metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00330 Arginine and proline metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 5
sbi03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 4
sot04145 Phagosome 3
sot00330 Arginine and proline metabolism 2
sot04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 3
sot04141 Protein processing in endoplasmic reticulum 3
sot00020 Citrate cycle (TCA cycle) 2
sot01210 2-Oxocarboxylic acid metabolism 2
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 5
cit00510 N-Glycan biosynthesis 4
cit00513 Various types of N-glycan biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 4
nta00280 Valine, leucine and isoleucine degradation 3
nta00350 Tyrosine metabolism 2
nta00010 Glycolysis / Gluconeogenesis 2
nta00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 3
nta04146 Peroxisome 2
nta00280 Valine, leucine and isoleucine degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832008 819804 100818794 100796794 101265933 101244118 100282945 103854470 103845801 100245913 7469094 11437832 11417773 107897647 107916112 106371848 106371903 8077026 102591537 102578911 102620398 107785810 107815775
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