ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107927404	CTP synthase
ath-u.5	emb2742	CTP synthase family protein
ath-u.5	AT4G20320	CTP synthase family protein
gma-u.5	100819563	CTP synthase
gma-u.5	100816167	CTP synthase
gma-u.5	100805857	CTP synthase
vvi-u.5	100249622	uncharacterized LOC100249622
vvi-u.5	100248684	uncharacterized LOC100248684
vvi-u.5	100248481	uncharacterized LOC100248481
ppo-u.5	7497562	uncharacterized LOC7497562
ppo-u.5	7495226	uncharacterized LOC7495226
ppo-u.5	7464580	uncharacterized LOC7464580
mtr-u.5	11419996	CTP synthase
mtr-u.5	25502430	CTP synthase
mtr-u.5	11444287	CTP synthase
sly-u.5	101257698	uncharacterized LOC101257698
sly-u.5	101244545	uncharacterized LOC101244545
sly-u.5	101247459	uncharacterized LOC101247459
osa-u.5	4352499	uncharacterized LOC4352499
osa-u.5	4339675	uncharacterized LOC4339675
zma-u.5	100382896	uncharacterized LOC100382896
zma-u.5	100280500	CTP synthase
zma-u.5	100281709	CTP synthase

Top 50 coexpressed genes to 107927404 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107927404 (ghi-r.1 coexpression data)

CoexMap"107927404"

[Cytoscape]

Annotation

functional annotation

KEGG

ghi00240 [list] [network] Pyrimidine metabolism (157 genes)

ghi01232 [list] [network] Nucleotide metabolism (202 genes)

ghi01240 [list] [network] Biosynthesis of cofactors (583 genes)

GO BP

GO:0006241 [list] [network] CTP biosynthetic process	(25 genes)	IEA
GO:0019856 [list] [network] pyrimidine nucleobase biosynthetic process	(37 genes)	IEA

GO CC

GO MF

GO:0003883 [list] [network] CTP synthase activity	(15 genes)	IEA
GO:0042802 [list] [network] identical protein binding	(46 genes)	IEA

Protein

XP_016713944.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, extr 2, cyto 1, E.R. 1, chlo_mito 1, cyto_E.R. 1

(predict for XP_016713944.2)

Subcellular
localization
TargetP

scret 6

(predict for XP_016713944.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107927404	ath-u.5 for emb2742	ath-u.5 for AT4G20320	gma-u.5 for 100819563	gma-u.5 for 100816167	gma-u.5 for 100805857	vvi-u.5 for 100249622	vvi-u.5 for 100248684	vvi-u.5 for 100248481	ppo-u.5 for 7497562	ppo-u.5 for 7495226	ppo-u.5 for 7464580	mtr-u.5 for 11419996	mtr-u.5 for 25502430	mtr-u.5 for 11444287	sly-u.5 for 101257698	sly-u.5 for 101244545	sly-u.5 for 101247459	osa-u.5 for 4352499	osa-u.5 for 4339675	zma-u.5 for 100382896	zma-u.5 for 100280500	zma-u.5 for 100281709

Ortholog

Ortholog ID: 628

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

CTP synthase

CTP synthase family protein

CTP synthase 1

CTP synthase

CTP synthase-like

uncharacterized LOC102615633

uncharacterized LOC102617170

CTP synthase

uncharacterized LOC100249622

uncharacterized LOC100248684

uncharacterized LOC7477774

uncharacterized LOC7460661

CTP synthase

uncharacterized LOC101244545

uncharacterized LOC101257698

CTP synthase-like

uncharacterized LOC107766820

uncharacterized LOC107823440

uncharacterized LOC4326656

uncharacterized LOC4324172

CTP synthase

ustilago maydis induced8

CTP synthase

CTP synthase-like

CTP synthase

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00240	Pyrimidine metabolism	4
ghi01232	Nucleotide metabolism	4
ghi01240	Biosynthesis of cofactors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00860	Porphyrin metabolism	2
ghi00240	Pyrimidine metabolism	2
ghi01232	Nucleotide metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00052	Galactose metabolism	2
ath00053	Ascorbate and aldarate metabolism	2
ath00562	Inositol phosphate metabolism	2
ath01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	5
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00240	Pyrimidine metabolism	4
bna01232	Nucleotide metabolism	4
bna01240	Biosynthesis of cofactors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00240	Pyrimidine metabolism	3
bna01232	Nucleotide metabolism	3
bna01240	Biosynthesis of cofactors	3
bna00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00970	Aminoacyl-tRNA biosynthesis	3
cit03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01232	Nucleotide metabolism	5
gma01240	Biosynthesis of cofactors	5
gma00240	Pyrimidine metabolism	3
gma00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00240	Pyrimidine metabolism	2
gma01232	Nucleotide metabolism	2
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	7
vvi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00940	Phenylpropanoid biosynthesis	3
ppo01230	Biosynthesis of amino acids	3
ppo00240	Pyrimidine metabolism	2
ppo01232	Nucleotide metabolism	2
ppo01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	5
ppo00240	Pyrimidine metabolism	2
ppo01232	Nucleotide metabolism	2
ppo01240	Biosynthesis of cofactors	2
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00561	Glycerolipid metabolism	2
mtr00240	Pyrimidine metabolism	2
mtr01232	Nucleotide metabolism	2
mtr01240	Biosynthesis of cofactors	2
mtr00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	8
sly03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2
sot04120	Ubiquitin mediated proteolysis	2
sot03082	ATP-dependent chromatin remodeling	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4
sot00240	Pyrimidine metabolism	2
sot01232	Nucleotide metabolism	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00620	Pyruvate metabolism	2
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	8
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00280	Valine, leucine and isoleucine degradation	2
osa01200	Carbon metabolism	2
osa00240	Pyrimidine metabolism	2
osa01232	Nucleotide metabolism	2
osa01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00240	Pyrimidine metabolism	2
zma01232	Nucleotide metabolism	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00240	Pyrimidine metabolism	4
zma01232	Nucleotide metabolism	4
zma01240	Biosynthesis of cofactors	4
zma00052	Galactose metabolism	2
zma00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	6
tae04075	Plant hormone signal transduction	3
tae04626	Plant-pathogen interaction	3
tae00240	Pyrimidine metabolism	3
tae01232	Nucleotide metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01240	Biosynthesis of cofactors	3
hvu01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00480	Glutathione metabolism	5
sbi00053	Ascorbate and aldarate metabolism	3
sbi00270	Cysteine and methionine metabolism	2
sbi00240	Pyrimidine metabolism	2
sbi00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04016	MAPK signaling pathway - plant	2
sbi04075	Plant hormone signal transduction	2
sbi00240	Pyrimidine metabolism	2
sbi01232	Nucleotide metabolism	2
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00500	Starch and sucrose metabolism	3
bdi00240	Pyrimidine metabolism	2
bdi01232	Nucleotide metabolism	2
bdi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00240	Pyrimidine metabolism	2
bdi01232	Nucleotide metabolism	2
bdi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00240	Pyrimidine metabolism	3
cre03030	DNA replication	2
cre03420	Nucleotide excision repair	2
cre01232	Nucleotide metabolism	2
cre01240	Biosynthesis of cofactors	2

Expression

Expression pattern

Entrez Gene ID^*

107893545

107945267

839964

827780

103867409

103870238

106377480

106412810

102615633

102617170

100816167

100778080

100249622

100248684

7477774

7460661

11444287

11419996

101244545

101257698

102578541

102597065

107766820

107823440

4326656

4324172

103651612

100193891

123147533

123443994

123451190

8066360

8083780

100836868

100834103

5723215

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Species	ghi	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	sot	nta	cre	tae
Paralog	1	2	3	3	3	3	3	2	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107927404 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107927404 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**