ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107928785	protein DMR6-LIKE OXYGENASE 1
ghi-r.1	107928908	protein DMR6-LIKE OXYGENASE 1
ghi-r.1	107928890	flavanone 3-dioxygenase 2
ghi-r.1	107936953	protein DMR6-LIKE OXYGENASE 1
ath-u.5	AT3G19000	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
ath-u.5	AT3G19010	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
bra-r.6	103859784	protein DMR6-LIKE OXYGENASE 1
bra-r.6	103859785	protein DMR6-LIKE OXYGENASE 1-like
bra-r.6	103869502	protein DMR6-LIKE OXYGENASE 1
bna-r.1	111210436	feruloyl CoA ortho-hydroxylase 1-like
bna-r.1	106453927	protein DMR6-LIKE OXYGENASE 1-like
bna-r.1	125575283	protein DMR6-LIKE OXYGENASE 1-like
cit-r.1	127899121	jasmonate-induced oxygenase 2-like
cit-r.1	127899188	protein DMR6-LIKE OXYGENASE 2-like
cit-r.1	102607952	protein DMR6-LIKE OXYGENASE 1-like
gma-u.5	100806672	protein DMR6-LIKE OXYGENASE 2
gma-u.5	SAN1A	senescence-associated nodulin 1A
gma-u.5	100807298	gibberellin 20 oxidase 1-like
vvi-u.5	100263992	jasmonate-induced oxygenase 2
ppo-u.5	7456413	protein DMR6-LIKE OXYGENASE 2
ppo-u.5	18102122	protein DMR6-LIKE OXYGENASE 1
mtr-u.5	11445110	protein DMR6-LIKE OXYGENASE 1
mtr-u.5	25482660	flavonol synthase/flavanone 3-hydroxylase
mtr-u.5	11445170	protein DMR6-LIKE OXYGENASE 1
sly-u.5	101253836	protein DMR6-LIKE OXYGENASE 2
sly-u.5	101254137	protein DMR6-LIKE OXYGENASE 2
sot-r.1	102589984	1-aminocyclopropane-1-carboxylate oxidase 5-like
sot-r.1	102590301	flavonol synthase/flavanone 3-hydroxylase-like
nta-r.1	107790047	jasmonate-induced oxygenase 2-like
nta-r.1	107790046	protein LATERAL BRANCHING OXIDOREDUCTASE 1
nta-r.1	107772584	protein LATERAL BRANCHING OXIDOREDUCTASE 1
osa-u.5	4333459	jasmonate-induced oxygenase 2
osa-u.5	9267648	naringenin,2-oxoglutarate 3-dioxygenase
zma-u.5	100283169	uncharacterized LOC100283169
tae-r.2	123086818	jasmonate-induced oxygenase 2
tae-r.2	123099592	jasmonate-induced oxygenase 2
tae-r.2	123091150	jasmonate-induced oxygenase 2
hvu-r.1	123451151	jasmonate-induced oxygenase 2
sbi-r.1	8062261	probable 2-oxoglutarate-dependent dioxygenase At5g05600
sbi-r.1	8062262	probable 2-oxoglutarate-dependent dioxygenase At5g05600
sbi-r.1	8062260	probable 2-oxoglutarate-dependent dioxygenase At5g05600
bdi-r.1	100827647	probable 2-oxoglutarate-dependent dioxygenase At5g05600

Top 50 coexpressed genes to 107928785 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107928785 (ghi-r.1 coexpression data)

CoexMap"107928785"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_016715539.1 [sequence] [blastp]

Subcellular
localization
wolf

E.R. 2, E.R._vacu 2, vacu 1, cyto 1, plas 1, cyto_plas 1, chlo 1, nucl 1, mito 1, pero 1, chlo_mito 1, golg_plas 1, cysk_plas 1

(predict for XP_016715539.1)

Subcellular
localization
TargetP

scret 9

(predict for XP_016715539.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107928785	ghi-r.1 for 107928908	ghi-r.1 for 107928890	ghi-r.1 for 107936953	ath-u.5 for AT3G19000	ath-u.5 for AT3G19010	bra-r.6 for 103859784	bra-r.6 for 103859785	bra-r.6 for 103869502	bna-r.1 for 111210436	bna-r.1 for 106453927	bna-r.1 for 125575283	cit-r.1 for 127899121	cit-r.1 for 127899188	cit-r.1 for 102607952	gma-u.5 for 100806672	gma-u.5 for SAN1A	gma-u.5 for 100807298	vvi-u.5 for 100263992	ppo-u.5 for 7456413	ppo-u.5 for 18102122	mtr-u.5 for 11445110	mtr-u.5 for 25482660	mtr-u.5 for 11445170	sly-u.5 for 101253836	sly-u.5 for 101254137	sot-r.1 for 102589984	sot-r.1 for 102590301	nta-r.1 for 107790047	nta-r.1 for 107790046	nta-r.1 for 107772584	osa-u.5 for 4333459	osa-u.5 for 9267648	zma-u.5 for 100283169	tae-r.2 for 123086818	tae-r.2 for 123099592	tae-r.2 for 123091150	hvu-r.1 for 123451151	sbi-r.1 for 8062261	sbi-r.1 for 8062262	sbi-r.1 for 8062260	bdi-r.1 for 100827647

Ortholog

Ortholog ID: 1345

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

protein DMR6-LIKE OXYGENASE 1

flavanone 3-dioxygenase 2

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

protein DMR6-LIKE OXYGENASE 1

protein DMR6-LIKE OXYGENASE 1-like

protein DMR6-LIKE OXYGENASE 1

flavonol synthase/flavanone 3-hydroxylase-like

protein DMR6-LIKE OXYGENASE 1

flavonol synthase/flavanone 3-hydroxylase-like

protein DMR6-LIKE OXYGENASE 2-like

protein DMR6-LIKE OXYGENASE 2

gibberellin 20 oxidase 1-like

protein DMR6-LIKE OXYGENASE 1

jasmonate-induced oxygenase 2

protein DMR6-LIKE OXYGENASE 1

protein DMR6-LIKE OXYGENASE 2

protein DMR6-LIKE OXYGENASE 1

protein DMR6-LIKE OXYGENASE 2

protein DMR6-LIKE OXYGENASE 1

flavanone 3-dioxygenase

protein DMR6-LIKE OXYGENASE 1

protein DMR6-LIKE OXYGENASE 2

1-aminocyclopropane-1-carboxylate oxidase 5-like

flavonol synthase/flavanone 3-hydroxylase-like

protein LATERAL BRANCHING OXIDOREDUCTASE 1

protein LATERAL BRANCHING OXIDOREDUCTASE 1-like

jasmonate-induced oxygenase 2

naringenin,2-oxoglutarate 3-dioxygenase

uncharacterized LOC100283169

jasmonate-induced oxygenase 2

probable 2-oxoglutarate-dependent dioxygenase At5g05600

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	3
ath00270	Cysteine and methionine metabolism	2
ath00920	Sulfur metabolism	2
ath01230	Biosynthesis of amino acids	2
ath00260	Glycine, serine and threonine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00460	Cyanoamino acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00052	Galactose metabolism	2
bra00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00630	Glyoxylate and dicarboxylate metabolism	2
bna01200	Carbon metabolism	2
bna04146	Peroxisome	2
bna00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00270	Cysteine and methionine metabolism	3
cit00670	One carbon pool by folate	2
cit04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01230	Biosynthesis of amino acids	2
cit04120	Ubiquitin mediated proteolysis	2
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00920	Sulfur metabolism	3
gma01320	Sulfur cycle	3
gma00460	Cyanoamino acid metabolism	3
gma00670	One carbon pool by folate	3
gma04981	Folate transport and metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	2
gma00670	One carbon pool by folate	2
gma04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	3
gma00670	One carbon pool by folate	3
gma04981	Folate transport and metabolism	3
gma00920	Sulfur metabolism	2
gma01320	Sulfur cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00920	Sulfur metabolism	4
ppo01320	Sulfur cycle	3
ppo00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00920	Sulfur metabolism	2
ppo01320	Sulfur cycle	2
ppo04136	Autophagy - other	2
ppo00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01200	Carbon metabolism	2
mtr01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01200	Carbon metabolism	2
mtr01230	Biosynthesis of amino acids	2
mtr00920	Sulfur metabolism	2
mtr01320	Sulfur cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01200	Carbon metabolism	2
mtr01230	Biosynthesis of amino acids	2
mtr00920	Sulfur metabolism	2
mtr01320	Sulfur cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04145	Phagosome	4
sly04517	IgSF CAM signaling	4
sly04814	Motor proteins	4
sly00460	Cyanoamino acid metabolism	2
sly00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00073	Cutin, suberine and wax biosynthesis	4
sly04016	MAPK signaling pathway - plant	2
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00920	Sulfur metabolism	4
sot01320	Sulfur cycle	4
sot00270	Cysteine and methionine metabolism	2
sot00670	One carbon pool by folate	2
sot01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	12
nta00130	Ubiquinone and other terpenoid-quinone biosynthesis	7
nta00941	Flavonoid biosynthesis	7
nta00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	7
nta00400	Phenylalanine, tyrosine and tryptophan biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00592	alpha-Linolenic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00270	Cysteine and methionine metabolism	3
osa00920	Sulfur metabolism	3
osa01320	Sulfur cycle	3
osa00480	Glutathione metabolism	2
osa01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00920	Sulfur metabolism	2
zma00260	Glycine, serine and threonine metabolism	2
zma00630	Glyoxylate and dicarboxylate metabolism	2
zma01200	Carbon metabolism	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00920	Sulfur metabolism	5
tae01320	Sulfur cycle	5
tae00480	Glutathione metabolism	2
tae00250	Alanine, aspartate and glutamate metabolism	2
tae00260	Glycine, serine and threonine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00920	Sulfur metabolism	5
tae01320	Sulfur cycle	5
tae00480	Glutathione metabolism	2
tae00592	alpha-Linolenic acid metabolism	2
tae00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00480	Glutathione metabolism	4
tae00920	Sulfur metabolism	3
tae01320	Sulfur cycle	3
tae00250	Alanine, aspartate and glutamate metabolism	2
tae00260	Glycine, serine and threonine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00270	Cysteine and methionine metabolism	2
sbi00920	Sulfur metabolism	2
sbi01320	Sulfur cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00270	Cysteine and methionine metabolism	4
sbi01240	Biosynthesis of cofactors	3
sbi00920	Sulfur metabolism	3
sbi01320	Sulfur cycle	3
sbi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00920	Sulfur metabolism	2
sbi01320	Sulfur cycle	2

Expression

Expression pattern

Entrez Gene ID^*

107928908

107928890

121231906

821433

821434

103859784

103859785

103869502

125604379

106446861

106446862

127899188

102627081

102627848

100806672

100809985

100810518

100258826

100247063

100252188

7456413

18102122

18102121

11445110

11444607

11443993

101253836

101254137

102589984

102590301

107790046

107772584

107796747

4333459

9267648

100283169

123086818

123099592

123091150

123451151

8062261

8062262

8062260

100827647

The preparation time of this page was 0.2 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	3	3	3	1	2	3	2	2	3	2	1	3	1	3	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107928785 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107928785 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**