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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107929559   spermine synthase-like 
 ath-u.5   SPDS3   spermidine synthase 3 
 gma-u.5   100816988   spermine synthase 
 gma-u.5   100815244   spermine synthase 
 vvi-u.5   100232840   spermine synthase 
 ppo-u.5   7489825   spermine synthase 
 ppo-u.5   7465536   spermine synthase 
 mtr-u.5   11417417   spermine synthase 
 mtr-u.5   25482358   spermine synthase 
 sly-u.5   SPM1   SPM1 protein 
 osa-u.5   4328910   spermine synthase 
 osa-u.5   4341195   spermine synthase 
 zma-u.5   732743   spermine synthase1 
 zma-u.5   100279222   spermidine synthase 1 
 zma-u.5   100282933   spermidine synthase 1 

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Top 50 coexpressed genes to 107929559 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107929559 (ghi-r.1 coexpression data)

CoexMap"107929559"


ghiLOC107929559 | Entrez gene ID : 107929559    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 1 2 1 2 2 1 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00270 [list] [network] Cysteine and methionine metabolism (291 genes)
ghi00330 [list] [network] Arginine and proline metabolism (150 genes)
ghi00480 [list] [network] Glutathione metabolism (226 genes)
GO BP
GO:0006595 [list] [network] polyamine metabolic process  (44 genes)  IEA  
GO CC
GO MF
GO:0003824 [list] [network] catalytic activity  (20761 genes)  IEA  
Protein NP_001314232.1 [sequence] [blastp]
XP_016716508.2 [sequence] [blastp]
XP_016716509.2 [sequence] [blastp]
XP_016716510.2 [sequence] [blastp]
XP_016716511.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 1,  nucl 1,  mito 1,  plas 1,  cysk 1,  chlo_mito 1,  cysk_nucl 1,  nucl_plas 1,  cysk_plas 1,  mito_plas 1  (predict for NP_001314232.1)
cyto 7,  chlo 1,  nucl 1,  mito 1,  cysk 1,  chlo_mito 1,  cysk_nucl 1  (predict for XP_016716508.2)
cyto 7,  chlo 1,  nucl 1,  mito 1,  cysk 1,  chlo_mito 1,  cysk_nucl 1  (predict for XP_016716509.2)
cyto 7,  chlo 1,  nucl 1,  mito 1,  cysk 1,  chlo_mito 1,  cysk_nucl 1  (predict for XP_016716510.2)
cyto 7,  chlo 1,  nucl 1,  mito 1,  cysk 1,  chlo_mito 1,  cysk_nucl 1  (predict for XP_016716511.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001314232.1)
other 8  (predict for XP_016716508.2)
other 8  (predict for XP_016716509.2)
other 8  (predict for XP_016716510.2)
other 8  (predict for XP_016716511.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107929559
ath-u.5
for
SPDS3
gma-u.5
for
100816988
gma-u.5
for
100815244
vvi-u.5
for
100232840
ppo-u.5
for
7489825
ppo-u.5
for
7465536
mtr-u.5
for
11417417
mtr-u.5
for
25482358
sly-u.5
for
SPM1
osa-u.5
for
4328910
osa-u.5
for
4341195
zma-u.5
for
732743
zma-u.5
for
100279222
zma-u.5
for
100282933


Ortholog ID: 4993
Species ghi ghi ath bra bra bna bna cit gma gma vvi ppo ppo mtr mtr sly sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi
Symbol LOC107910988 LOC107908990 SPDS3 LOC103852054 LOC103844792 LOC106367536 LOC106391720 LOC102621922 LOC100816988 LOC100815244 LOC100232840 LOC7489825 LOC7465536 LOC11417417 LOC25482358 SPM1 LOC102582757 LOC107764611 LOC107770315 LOC4341195 LOC4328910 LOC100282933 LOC732743 LOC123120961 LOC123147926 LOC123394905 LOC123410028 LOC8078343 LOC8085223 LOC100831817 LOC100836971
Function* spermine synthase spermine synthase spermidine synthase 3 spermine synthase spermine synthase spermine synthase-like spermine synthase spermine synthase spermine synthase spermine synthase spermine synthase spermine synthase spermine synthase spermine synthase spermine synthase SPM1 protein spermine synthase spermine synthase spermine synthase spermine synthase spermine synthase spermidine synthase 1 spermine synthase1 spermine synthase spermine synthase spermine synthase-like spermine synthase-like spermine synthase spermine synthase spermine synthase spermine synthase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 4
ghi00330 Arginine and proline metabolism 4
ghi00480 Glutathione metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 4
ghi00330 Arginine and proline metabolism 4
ghi00480 Glutathione metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 7
ath00330 Arginine and proline metabolism 3
ath01200 Carbon metabolism 2
ath04141 Protein processing in endoplasmic reticulum 2
ath00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 3
bna00330 Arginine and proline metabolism 3
bna00480 Glutathione metabolism 3
bna00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 3
bna00330 Arginine and proline metabolism 3
bna00480 Glutathione metabolism 3
bna00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00270 Cysteine and methionine metabolism 2
gma00330 Arginine and proline metabolism 2
gma00480 Glutathione metabolism 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00270 Cysteine and methionine metabolism 2
gma00330 Arginine and proline metabolism 2
gma00480 Glutathione metabolism 2
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00270 Cysteine and methionine metabolism 2
vvi00330 Arginine and proline metabolism 2
vvi00360 Phenylalanine metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 4
ppo04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ppo00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00270 Cysteine and methionine metabolism 2
mtr00330 Arginine and proline metabolism 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00330 Arginine and proline metabolism 4
sly00270 Cysteine and methionine metabolism 3
sly00940 Phenylpropanoid biosynthesis 3
sly00941 Flavonoid biosynthesis 2
sly00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00270 Cysteine and methionine metabolism 4
sot00330 Arginine and proline metabolism 3
sot00480 Glutathione metabolism 3
sot04122 Sulfur relay system 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta00330 Arginine and proline metabolism 2
nta00480 Glutathione metabolism 2
nta00940 Phenylpropanoid biosynthesis 2
nta00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta00330 Arginine and proline metabolism 2
nta00480 Glutathione metabolism 2
nta00940 Phenylpropanoid biosynthesis 2
nta00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00270 Cysteine and methionine metabolism 3
osa00480 Glutathione metabolism 3
osa01230 Biosynthesis of amino acids 2
osa01240 Biosynthesis of cofactors 2
osa00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 4
zma03050 Proteasome 3
zma03082 ATP-dependent chromatin remodeling 2
zma03083 Polycomb repressive complex 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 3
tae00330 Arginine and proline metabolism 3
tae00480 Glutathione metabolism 3
tae03082 ATP-dependent chromatin remodeling 3
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00052 Galactose metabolism 3
tae00500 Starch and sucrose metabolism 3
tae00270 Cysteine and methionine metabolism 3
tae00330 Arginine and proline metabolism 3
tae00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00250 Alanine, aspartate and glutamate metabolism 2
hvu00260 Glycine, serine and threonine metabolism 2
hvu00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00270 Cysteine and methionine metabolism 3
sbi01240 Biosynthesis of cofactors 3
sbi00330 Arginine and proline metabolism 2
sbi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi00270 Cysteine and methionine metabolism 2
sbi00330 Arginine and proline metabolism 2
sbi00480 Glutathione metabolism 2
sbi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 6
bdi01200 Carbon metabolism 6
bdi00710 Carbon fixation by Calvin cycle 3
bdi00270 Cysteine and methionine metabolism 2
bdi04146 Peroxisome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107910988 107908990 835392 103852054 103844792 106367536 106391720 102621922 100816988 100815244 100232840 7489825 7465536 11417417 25482358 543894 102582757 107764611 107770315 4341195 4328910 100282933 732743 123120961 123147926 123394905 123410028 8078343 8085223 100831817 100836971
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