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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107930129   serine/threonine-protein phosphatase 4 regulatory subunit 3 
 ath-u.5   AT3G06670   binding protein 
 ath-u.5   AT5G49390   serine/threonine-protein phosphatase 4 regulatory subunit-like protein 
 gma-u.5   100802657   serine/threonine-protein phosphatase 4 regulatory subunit 3A 
 gma-u.5   100786790   serine/threonine-protein phosphatase 4 regulatory subunit 3 
 gma-u.5   100775758   serine/threonine-protein phosphatase 4 regulatory subunit 3 
 vvi-u.5   100241492   uncharacterized LOC100241492 
 ppo-u.5   7482268   uncharacterized LOC7482268 
 ppo-u.5   7485913   uncharacterized LOC7485913 
 mtr-u.5   11422056   serine/threonine-protein phosphatase 4 regulatory subunit 3 
 mtr-u.5   11415143   serine/threonine-protein phosphatase 4 regulatory subunit 3 
 sly-u.5   101266318   uncharacterized LOC101266318 
 sly-u.5   101260566   uncharacterized LOC101260566 
 osa-u.5   4326847   uncharacterized LOC4326847 
 osa-u.5   4337863   uncharacterized LOC4337863 
 zma-u.5   100502168   uncharacterized LOC100502168 
 zma-u.5   103650148   serine/threonine-protein phosphatase 4 regulatory subunit 3B 

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Top 50 coexpressed genes to 107930129 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107930129 (ghi-r.1 coexpression data)

CoexMap"107930129"


ghiLOC107930129 | Entrez gene ID : 107930129    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 2 3 1 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006470 [list] [network] protein dephosphorylation  (336 genes)  IEA  
GO CC
GO:0030289 [list] [network] protein phosphatase 4 complex  (15 genes)  IEA  
GO:0005654 [list] [network] nucleoplasm  (545 genes)  IEA  
GO MF
GO:0072542 [list] [network] protein phosphatase activator activity  (17 genes)  IEA  
Protein XP_016717187.1 [sequence] [blastp]
XP_016717188.1 [sequence] [blastp]
XP_016717189.1 [sequence] [blastp]
XP_040967321.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto_nucl 6,  nucl 4,  cyto 4  (predict for XP_016717187.1)
cyto_nucl 6,  nucl 4,  cyto 4  (predict for XP_016717188.1)
nucl 4,  cyto 3,  chlo 2,  nucl_plas 2  (predict for XP_016717189.1)
nucl 3,  cyto 3,  cyto_nucl 3,  mito 2  (predict for XP_040967321.1)
Subcellular
localization
TargetP
mito 6,  other 5  (predict for XP_016717187.1)
mito 5,  other 5  (predict for XP_016717188.1)
mito 6,  other 5  (predict for XP_016717189.1)
mito 6,  other 5  (predict for XP_040967321.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107930129
ath-u.5
for
AT3G06670
ath-u.5
for
AT5G49390
gma-u.5
for
100802657
gma-u.5
for
100786790
gma-u.5
for
100775758
vvi-u.5
for
100241492
ppo-u.5
for
7482268
ppo-u.5
for
7485913
mtr-u.5
for
11422056
mtr-u.5
for
11415143
sly-u.5
for
101266318
sly-u.5
for
101260566
osa-u.5
for
4326847
osa-u.5
for
4337863
zma-u.5
for
100502168
zma-u.5
for
103650148


Ortholog ID: 4070
Species ghi ghi ath ath bra bra bna bna cit gma gma vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu sbi bdi cre
Symbol LOC107930129 LOC107896621 AT3G06670 AT5G49390 LOC103870724 LOC103849737 LOC106400534 LOC106389041 LOC102624367 LOC100775758 LOC100802657 LOC100241492 LOC7482268 LOC7485913 LOC11415143 LOC11422056 LOC101260566 LOC101266318 LOC102602525 LOC102583086 LOC107829856 LOC107766687 LOC4326847 LOC4337863 LOC103650148 LOC100502168 LOC123069818 LOC123078368 LOC123443640 LOC8086323 LOC100842638 CHLRE_17g701300v5
Function* serine/threonine-protein phosphatase 4 regulatory subunit 3 serine/threonine-protein phosphatase 4 regulatory subunit 3 binding protein serine/threonine-protein phosphatase 4 regulatory subunit-like protein serine/threonine-protein phosphatase 4 regulatory subunit 3 serine/threonine-protein phosphatase 4 regulatory subunit 3 serine/threonine-protein phosphatase 4 regulatory subunit 3 serine/threonine-protein phosphatase 4 regulatory subunit 3-like uncharacterized LOC102624367 serine/threonine-protein phosphatase 4 regulatory subunit 3 serine/threonine-protein phosphatase 4 regulatory subunit 3A uncharacterized LOC100241492 uncharacterized LOC7482268 uncharacterized LOC7485913 serine/threonine-protein phosphatase 4 regulatory subunit 3 serine/threonine-protein phosphatase 4 regulatory subunit 3 uncharacterized LOC101260566 uncharacterized LOC101266318 serine/threonine-protein phosphatase 4 regulatory subunit 3 serine/threonine-protein phosphatase 4 regulatory subunit 3 uncharacterized LOC107829856 uncharacterized LOC107766687 uncharacterized LOC4326847 uncharacterized LOC4337863 serine/threonine-protein phosphatase 4 regulatory subunit 3B uncharacterized LOC100502168 serine/threonine-protein phosphatase 4 regulatory subunit 3B serine/threonine-protein phosphatase 4 regulatory subunit 3B serine/threonine-protein phosphatase 4 regulatory subunit 3B serine/threonine-protein phosphatase 4 regulatory subunit 3 serine/threonine-protein phosphatase 4 regulatory subunit 3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00280 Valine, leucine and isoleucine degradation 2
ghi00410 beta-Alanine metabolism 2
ghi00640 Propanoate metabolism 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath03015 mRNA surveillance pathway 2
ath00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 2
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 2
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00562 Inositol phosphate metabolism 2
gma04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
sly03015 mRNA surveillance pathway 2
sly04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma03040 Spliceosome 3
zma03015 mRNA surveillance pathway 2
zma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107930129 107896621 819852 834999 103870724 103849737 106400534 106389041 102624367 100775758 100802657 100241492 7482268 7485913 11415143 11422056 101260566 101266318 102602525 102583086 107829856 107766687 4326847 4337863 103650148 100502168 123069818 123078368 123443640 8086323 100842638 5717297
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