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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107931050   histone deacetylase 15 
 ath-u.5   HDA15   histone deacetylase 15 
 gma-u.5   HDA5   histone deacetylase 
 gma-u.5   HDA17   histone deacetylase 
 vvi-u.5   100268092   histone deacetylase 15 
 ppo-u.5   7487094   histone deacetylase 15 
 mtr-u.5   25493939   histone deacetylase 15 
 sly-u.5   101260413   histone deacetylase 15 
 osa-u.5   4342472   histone deacetylase 15 
 zma-u.5   541972   histone deacetylase 

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Top 50 coexpressed genes to 107931050 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107931050 (ghi-r.1 coexpression data)

CoexMap"107931050"


ghiLOC107931050 | Entrez gene ID : 107931050    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000122 [list] [network] negative regulation of transcription by RNA polymerase II  (50 genes)  IEA  
GO CC
GO:0000118 [list] [network] histone deacetylase complex  (92 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0004407 [list] [network] histone deacetylase activity  (19 genes)  IEA  
GO:0008134 [list] [network] transcription factor binding  (49 genes)  IEA  
Protein XP_016718319.1 [sequence] [blastp]
XP_016718320.1 [sequence] [blastp]
XP_016718321.1 [sequence] [blastp]
XP_016718324.1 [sequence] [blastp]
XP_040939735.1 [sequence] [blastp]
XP_040939736.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  chlo 2  (predict for XP_016718319.1)
nucl 7,  chlo 2  (predict for XP_016718320.1)
nucl 5,  cyto 3,  cysk_nucl 3  (predict for XP_016718321.1)
nucl 5,  cyto 3,  cysk_nucl 3  (predict for XP_016718324.1)
nucl 7,  chlo 2  (predict for XP_040939735.1)
nucl 7,  chlo 2  (predict for XP_040939736.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for XP_016718319.1)
other 7,  chlo 3  (predict for XP_016718320.1)
other 9  (predict for XP_016718321.1)
other 8  (predict for XP_016718324.1)
other 7,  chlo 3  (predict for XP_040939735.1)
other 7,  chlo 3  (predict for XP_040939736.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107931050
ath-u.5
for
HDA15
gma-u.5
for
HDA5
gma-u.5
for
HDA17
vvi-u.5
for
100268092
ppo-u.5
for
7487094
mtr-u.5
for
25493939
sly-u.5
for
101260413
osa-u.5
for
4342472
zma-u.5
for
541972


Ortholog ID: 9491
Species ghi ghi ath bra bna bna cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC107943186 LOC107931050 HDA15 LOC103869555 LOC106367495 LOC111215644 LOC102616223 HDA17 HDA5 LOC100268092 LOC7487094 LOC25493939 LOC101260413 LOC102603454 LOC107761154 LOC107824523 LOC4342472 LOC541972 LOC780627 LOC123102365 LOC123395110 LOC110432512 LOC100831369
Function* histone deacetylase 15 histone deacetylase 15 histone deacetylase 15 histone deacetylase 15 histone deacetylase 15 histone deacetylase 15 histone deacetylase 15 histone deacetylase histone deacetylase histone deacetylase 15 histone deacetylase 15 histone deacetylase 15 histone deacetylase 15 histone deacetylase 15 histone deacetylase 15 histone deacetylase 15 histone deacetylase 15 histone deacetylase histone deacetylase 15 histone deacetylase 15 histone deacetylase 15-like histone deacetylase 15-like histone deacetylase 15
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna04120 Ubiquitin mediated proteolysis 4
bna03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna04120 Ubiquitin mediated proteolysis 4
bna03082 ATP-dependent chromatin remodeling 2
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 2
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 16
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 10
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 3
osa03040 Spliceosome 3
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 5
zma03018 RNA degradation 3
zma00970 Aminoacyl-tRNA biosynthesis 2
zma03015 mRNA surveillance pathway 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae03008 Ribosome biogenesis in eukaryotes 2
tae04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00053 Ascorbate and aldarate metabolism 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi03040 Spliceosome 2
sbi03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107943186 107931050 821382 103869555 106367495 111215644 102616223 100802870 100804724 100268092 7487094 25493939 101260413 102603454 107761154 107824523 4342472 541972 780627 123102365 123395110 110432512 100831369
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