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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107936682   putative pre-16S rRNA nuclease 
 ghi-r.1   107962975   putative pre-16S rRNA nuclease 
 ath-u.5   AT3G52905   Polynucleotidyl transferase, ribonuclease H-like superfamily protein 
 bra-r.6   103872151   putative pre-16S rRNA nuclease 
 cit-r.1   102610643   uncharacterized LOC102610643 
 gma-u.5   100305864   ribonuclease H-like superfamily protein 
 vvi-u.5   100266792   uncharacterized LOC100266792 
 ppo-u.5   7479316   uncharacterized LOC7479316 
 mtr-u.5   112421758   putative pre-16S rRNA nuclease 
 sly-u.5   101262873   uncharacterized LOC101262873 
 sot-r.1   102597279   putative pre-16S rRNA nuclease 
 nta-r.1   107773082   uncharacterized LOC107773082 
 nta-r.1   107801761   uncharacterized LOC107801761 
 osa-u.5   4326892   uncharacterized LOC4326892 
 zma-u.5   100217155   Polynucleotidyl transferase ribonuclease H-like superfamily protein 
 tae-r.2   123070882   putative pre-16S rRNA nuclease 
 tae-r.2   123062155   putative pre-16S rRNA nuclease 
 hvu-r.1   123444490   putative pre-16S rRNA nuclease 
 sbi-r.1   8079245   putative pre-16S rRNA nuclease 
 bdi-r.1   100833580   putative pre-16S rRNA nuclease 

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Top 50 coexpressed genes to 107936682 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107936682 (ghi-r.1 coexpression data)

CoexMap"107936682"


ghiLOC107936682 | Entrez gene ID : 107936682    
Species ghi ath bra cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi bna cre
Paralog 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000967 [list] [network] rRNA 5'-end processing  (10 genes)  IEA  
GO CC
GO MF
Protein XP_016724917.1 [sequence] [blastp]
XP_016724918.1 [sequence] [blastp]
XP_040954582.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 4,  cyto 1,  E.R. 1,  cyto_E.R. 1  (predict for XP_016724917.1)
chlo 5,  mito 4,  cyto 1,  E.R. 1,  cyto_E.R. 1  (predict for XP_016724918.1)
chlo 5,  nucl 2,  mito 2  (predict for XP_040954582.1)
Subcellular
localization
TargetP
other 4,  mito 4  (predict for XP_016724917.1)
other 4,  mito 4  (predict for XP_016724918.1)
other 3  (predict for XP_040954582.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107936682
ghi-r.1
for
107962975
ath-u.5
for
AT3G52905
bra-r.6
for
103872151
cit-r.1
for
102610643
gma-u.5
for
100305864
vvi-u.5
for
100266792
ppo-u.5
for
7479316
mtr-u.5
for
112421758
sly-u.5
for
101262873
sot-r.1
for
102597279
nta-r.1
for
107773082
nta-r.1
for
107801761
osa-u.5
for
4326892
zma-u.5
for
100217155
tae-r.2
for
123070882
tae-r.2
for
123062155
hvu-r.1
for
123444490
sbi-r.1
for
8079245
bdi-r.1
for
100833580


Ortholog ID: 9901
Species ghi ghi ath bra cit gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC107936682 LOC107962975 AT3G52905 LOC103872151 LOC102610643 LOC100305864 LOC100266792 LOC7479316 LOC112421758 LOC101262873 LOC102597279 LOC107773082 LOC107801761 LOC4326892 LOC100217155 LOC123070882 LOC123062155 LOC123444490 LOC8079245 LOC100833580
Function* putative pre-16S rRNA nuclease putative pre-16S rRNA nuclease Polynucleotidyl transferase, ribonuclease H-like superfamily protein putative pre-16S rRNA nuclease uncharacterized LOC102610643 ribonuclease H-like superfamily protein uncharacterized LOC100266792 uncharacterized LOC7479316 putative pre-16S rRNA nuclease uncharacterized LOC101262873 putative pre-16S rRNA nuclease uncharacterized LOC107773082 uncharacterized LOC107801761 uncharacterized LOC4326892 Polynucleotidyl transferase ribonuclease H-like superfamily protein putative pre-16S rRNA nuclease putative pre-16S rRNA nuclease putative pre-16S rRNA nuclease putative pre-16S rRNA nuclease putative pre-16S rRNA nuclease
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 7
bra03040 Spliceosome 2
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
cit03040 Spliceosome 3
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03010 Ribosome 4
gma03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 8
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
sot03420 Nucleotide excision repair 2
sot03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
nta00230 Purine metabolism 2
nta01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 4
nta00230 Purine metabolism 2
nta01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00510 N-Glycan biosynthesis 2
zma00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 4
hvu00860 Porphyrin metabolism 3
hvu01240 Biosynthesis of cofactors 3
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107936682 107962975 5008084 103872151 102610643 100305864 100266792 7479316 112421758 101262873 102597279 107773082 107801761 4326892 100217155 123070882 123062155 123444490 8079245 100833580
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