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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107936809   protein TIC 40, chloroplastic 
 ghi-r.1   121232116   protein TIC 40, chloroplastic 
 ath-u.5   TIC40   hydroxyproline-rich glycoprotein family protein 
 bra-r.6   103851058   protein TIC 40, chloroplastic 
 bra-r.6   103846314   protein TIC 40, chloroplastic 
 bna-r.1   125579023   protein TIC 40, chloroplastic-like 
 bna-r.1   106432131   protein TIC 40, chloroplastic 
 bna-r.1   106423634   protein TIC 40, chloroplastic 
 cit-r.1   102621793   protein TIC 40, chloroplastic 
 gma-u.5   100790904   protein TIC 40, chloroplastic 
 gma-u.5   100781154   protein TIC 40, chloroplastic 
 vvi-u.5   100265473   protein TIC 40, chloroplastic 
 ppo-u.5   7493557   protein TIC 40, chloroplastic 
 ppo-u.5   18106637   protein TIC 40, chloroplastic 
 mtr-u.5   25489188   protein TIC 40, chloroplastic 
 sly-u.5   101251351   protein TIC 40, chloroplastic 
 sot-r.1   102603856   protein TIC 40, chloroplastic 
 nta-r.1   107791726   protein TIC 40, chloroplastic 
 nta-r.1   107763892   protein TIC 40, chloroplastic-like 
 osa-u.5   4335926   protein TIC 40, chloroplastic 
 zma-u.5   100283576   translocon Tic40 
 zma-u.5   100285102   translocon Tic40 
 tae-r.2   123189284   protein TIC 40, chloroplastic 
 tae-r.2   123053376   protein TIC 40, chloroplastic 
 tae-r.2   123045531   protein TIC 40, chloroplastic 
 hvu-r.1   123426787   protein TIC 40, chloroplastic 
 sbi-r.1   8080326   protein TIC 40, chloroplastic 
 bdi-r.1   100844034   protein TIC 40, chloroplastic 
 cre-r.1   CHLRE_12g508000v5   uncharacterized protein 

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Top 50 coexpressed genes to 107936809 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107936809 (ghi-r.1 coexpression data)

CoexMap"107936809"


ghiLOC107936809 | Entrez gene ID : 107936809    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 2 3 1 2 1 2 1 1 1 2 1 2 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045037 [list] [network] protein import into chloroplast stroma  (18 genes)  IEA  
GO:0009658 [list] [network] chloroplast organization  (180 genes)  IEA  
GO CC
GO:0009706 [list] [network] chloroplast inner membrane  (53 genes)  IEA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (283 genes)  IEA  
GO MF
Protein XP_016725066.2 [sequence] [blastp]
XP_040953336.1 [sequence] [blastp]
XP_040953337.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 1,  nucl 1,  plas 1,  cyto_mito 1,  nucl_plas 1  (predict for XP_016725066.2)
nucl 4,  chlo 3,  cyto 1,  mito 1  (predict for XP_040953336.1)
nucl 6,  chlo 1,  mito 1,  plas 1,  chlo_mito 1,  mito_plas 1  (predict for XP_040953337.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_016725066.2)
scret 3  (predict for XP_040953336.1)
other 3  (predict for XP_040953337.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107936809
ghi-r.1
for
121232116
ath-u.5
for
TIC40
bra-r.6
for
103851058
bra-r.6
for
103846314
bna-r.1
for
125579023
bna-r.1
for
106432131
bna-r.1
for
106423634
cit-r.1
for
102621793
gma-u.5
for
100790904
gma-u.5
for
100781154
vvi-u.5
for
100265473
ppo-u.5
for
7493557
ppo-u.5
for
18106637
mtr-u.5
for
25489188
sly-u.5
for
101251351
sot-r.1
for
102603856
nta-r.1
for
107791726
nta-r.1
for
107763892
osa-u.5
for
4335926
zma-u.5
for
100283576
zma-u.5
for
100285102
tae-r.2
for
123189284
tae-r.2
for
123053376
tae-r.2
for
123045531
hvu-r.1
for
123426787
sbi-r.1
for
8080326
bdi-r.1
for
100844034
cre-r.1
for
CHLRE_12g508000v5


Ortholog ID: 7335
Species ghi ghi ath bra bra bna bna bna cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC107936809 LOC121232116 TIC40 LOC103851058 LOC103846314 LOC125579023 LOC106432131 LOC106423634 LOC102621793 LOC100790904 LOC100781154 LOC100265473 LOC7493557 LOC18106637 LOC25489188 LOC101251351 LOC102603856 LOC107791726 LOC107763892 LOC4335926 LOC100283576 LOC100285102 LOC123189284 LOC123053376 LOC123045531 LOC123426787 LOC8080326 LOC100844034 CHLRE_12g508000v5
Function* protein TIC 40, chloroplastic protein TIC 40, chloroplastic hydroxyproline-rich glycoprotein family protein protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic-like protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic-like protein TIC 40, chloroplastic translocon Tic40 translocon Tic40 protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
ghi00240 Pyrimidine metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
ghi00240 Pyrimidine metabolism 2
ghi01240 Biosynthesis of cofactors 2
ghi00062 Fatty acid elongation 2
ghi01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 2
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 3
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 3
vvi00785 Lipoic acid metabolism 3
vvi00010 Glycolysis / Gluconeogenesis 2
vvi00020 Citrate cycle (TCA cycle) 2
vvi00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00240 Pyrimidine metabolism 2
ppo01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr00061 Fatty acid biosynthesis 3
mtr01212 Fatty acid metabolism 3
mtr00620 Pyruvate metabolism 2
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 3
nta01230 Biosynthesis of amino acids 3
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00750 Vitamin B6 metabolism 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 3
nta01230 Biosynthesis of amino acids 3
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00750 Vitamin B6 metabolism 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 4
tae00270 Cysteine and methionine metabolism 3
tae00280 Valine, leucine and isoleucine degradation 3
tae00290 Valine, leucine and isoleucine biosynthesis 3
tae00770 Pantothenate and CoA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 3
tae00280 Valine, leucine and isoleucine degradation 3
tae00290 Valine, leucine and isoleucine biosynthesis 3
tae00770 Pantothenate and CoA biosynthesis 3
tae00966 Glucosinolate biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 3
tae00280 Valine, leucine and isoleucine degradation 3
tae00290 Valine, leucine and isoleucine biosynthesis 3
tae00770 Pantothenate and CoA biosynthesis 3
tae00966 Glucosinolate biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 4
hvu01230 Biosynthesis of amino acids 3
hvu03040 Spliceosome 2
hvu04141 Protein processing in endoplasmic reticulum 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03060 Protein export 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 4
cre03040 Spliceosome 3
cre04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107936809 121232116 831524 103851058 103846314 125579023 106432131 106423634 102621793 100790904 100781154 100265473 7493557 18106637 25489188 101251351 102603856 107791726 107763892 4335926 100283576 100285102 123189284 123053376 123045531 123426787 8080326 100844034 5716512
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