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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107936854   DNA mismatch repair protein MSH3 
 ghi-r.1   107947306   DNA mismatch repair protein MSH3 
 ath-u.5   MSH3   homolog of DNA mismatch repair protein MSH3 
 bra-r.6   103861568   DNA mismatch repair protein MSH3 
 bna-r.1   106407650   DNA mismatch repair protein MSH3 
 cit-r.1   102630910   DNA mismatch repair protein MSH3 
 gma-u.5   100789883   DNA mismatch repair protein MSH3 
 vvi-u.5   104878427   DNA mismatch repair protein MSH3 
 vvi-u.5   104878373   DNA mismatch repair protein MSH3 
 vvi-u.5   100266933   DNA mismatch repair protein MSH3 
 ppo-u.5   7474039   DNA mismatch repair protein MSH3 
 mtr-u.5   25485081   DNA mismatch repair protein MSH3 
 sly-u.5   101248748   DNA mismatch repair protein MSH3 
 sot-r.1   102598298   DNA mismatch repair protein MSH3 
 nta-r.1   107762128   DNA mismatch repair protein MSH3 
 nta-r.1   107801185   DNA mismatch repair protein MSH3 
 osa-u.5   4337442   DNA mismatch repair protein MSH3 
 zma-u.5   103642206   mutS superfamily protein 
 tae-r.2   123055834   DNA mismatch repair protein MSH3-like 
 tae-r.2   123045913   DNA mismatch repair protein MSH3 
 hvu-r.1   123427130   DNA mismatch repair protein MSH3 
 sbi-r.1   8085890   DNA mismatch repair protein MSH3 
 bdi-r.1   100824247   DNA mismatch repair protein MSH3 
 cre-r.1   CHLRE_09g397845v5   uncharacterized protein 

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Top 50 coexpressed genes to 107936854 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107936854 (ghi-r.1 coexpression data)

CoexMap"107936854"


ghiLOC107936854 | Entrez gene ID : 107936854    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 1 1 1 3 1 1 1 1 2 1 1 2 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03430 [list] [network] Mismatch repair (72 genes)
GO BP
GO:0006312 [list] [network] mitotic recombination  (16 genes)  IEA  
GO:0006298 [list] [network] mismatch repair  (36 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0030983 [list] [network] mismatched DNA binding  (30 genes)  IEA  
GO:0140664 [list] [network] ATP-dependent DNA damage sensor activity  (45 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (5155 genes)  IEA  
Protein XP_040939686.1 [sequence] [blastp]
XP_040939687.1 [sequence] [blastp]
XP_040939688.1 [sequence] [blastp]
XP_040939689.1 [sequence] [blastp]
XP_040939690.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  chlo_mito 5  (predict for XP_040939686.1)
chlo 9,  chlo_mito 5  (predict for XP_040939687.1)
chlo 9,  chlo_mito 5  (predict for XP_040939688.1)
chlo 9,  chlo_mito 5  (predict for XP_040939689.1)
chlo 9,  chlo_mito 5  (predict for XP_040939690.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_040939686.1)
chlo 7  (predict for XP_040939687.1)
chlo 7  (predict for XP_040939688.1)
chlo 7  (predict for XP_040939689.1)
chlo 7  (predict for XP_040939690.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107936854
ghi-r.1
for
107947306
ath-u.5
for
MSH3
bra-r.6
for
103861568
bna-r.1
for
106407650
cit-r.1
for
102630910
gma-u.5
for
100789883
vvi-u.5
for
104878427
vvi-u.5
for
104878373
vvi-u.5
for
100266933
ppo-u.5
for
7474039
mtr-u.5
for
25485081
sly-u.5
for
101248748
sot-r.1
for
102598298
nta-r.1
for
107762128
nta-r.1
for
107801185
osa-u.5
for
4337442
zma-u.5
for
103642206
tae-r.2
for
123055834
tae-r.2
for
123045913
hvu-r.1
for
123427130
sbi-r.1
for
8085890
bdi-r.1
for
100824247
cre-r.1
for
CHLRE_09g397845v5


Ortholog ID: 9045
Species ghi ghi ath bra bna cit gma vvi vvi vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol LOC107936854 LOC107947306 MSH3 LOC103861568 LOC106407650 LOC102630910 LOC100789883 LOC104878427 LOC104878373 LOC100266933 LOC7474039 LOC25485081 LOC101248748 LOC102598298 LOC107762128 LOC107801185 LOC4337442 LOC103642206 LOC123045913 LOC542976 LOC123427130 LOC8085890 LOC100824247 CHLRE_09g397845v5
Function* DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 homolog of DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 mutS superfamily protein DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 4
ath03430 Mismatch repair 4
ath03460 Fanconi anemia pathway 3
ath03030 DNA replication 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03430 Mismatch repair 2
bra03460 Fanconi anemia pathway 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03430 Mismatch repair 5
bna03460 Fanconi anemia pathway 4
bna00270 Cysteine and methionine metabolism 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 5
mtr03020 RNA polymerase 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 3
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03460 Fanconi anemia pathway 2
sot03030 DNA replication 2
sot03410 Base excision repair 2
sot03420 Nucleotide excision repair 2
sot03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03460 Fanconi anemia pathway 2
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03430 Mismatch repair 4
nta03460 Fanconi anemia pathway 2
nta03420 Nucleotide excision repair 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
tae03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
tae03430 Mismatch repair 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107936854 107947306 828659 103861568 106407650 102630910 100789883 104878427 104878373 100266933 7474039 25485081 101248748 102598298 107762128 107801185 4337442 103642206 123045913 542976 123427130 8085890 100824247 5720367
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