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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107937000   squalene synthase 2 
 ath-u.5   SQS1   squalene synthase 1 
 ath-u.5   SQS2   squalene synthase 2 
 gma-u.5   547940   squalene synthase 
 gma-u.5   100775983   squalene synthase 2 
 vvi-u.5   100265798   squalene synthase 2 
 ppo-u.5   7494303   squalene synthase 2 
 ppo-u.5   7461247   squalene synthase 1 
 mtr-u.5   11441556   squalene synthase 2 
 sly-u.5   SQS1   squalene synthase 
 sly-u.5   SQS4   squalene synthase-like 
 osa-u.5   4342663   squalene synthase 8 
 osa-u.5   4334492   squalene synthase 
 zma-u.5   100191601   uncharacterized LOC100191601 
 zma-u.5   541614   squalene synthase 1 

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Top 50 coexpressed genes to 107937000 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107937000 (ghi-r.1 coexpression data)

CoexMap"107937000"


ghiLOC107937000 | Entrez gene ID : 107937000    
Species ghi ath gma vvi ppo mtr sly osa zma hvu bna cit bra sbi bdi nta tae cre sot
Paralog 1 2 2 1 2 1 2 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00100 [list] [network] Steroid biosynthesis (86 genes)
ghi00909 [list] [network] Sesquiterpenoid and triterpenoid biosynthesis (60 genes)
GO BP
GO:0045338 [list] [network] farnesyl diphosphate metabolic process  (19 genes)  IEA  
GO:0008610 [list] [network] lipid biosynthetic process  (1117 genes)  IEA  
GO CC
GO:0005789 [list] [network] endoplasmic reticulum membrane  (634 genes)  IEA  
GO MF
GO:0051996 [list] [network] squalene synthase [NAD(P)H] activity  (4 genes)  IEA  
Protein XP_016725301.2 [sequence] [blastp]
XP_040972797.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  cysk 1,  chlo 1,  plas 1,  vacu 1,  E.R. 1,  golg 1,  cysk_nucl 1,  golg_plas 1,  E.R._vacu 1,  E.R._plas 1  (predict for XP_016725301.2)
cyto 5,  cysk 1,  chlo 1,  plas 1,  vacu 1,  E.R. 1,  golg 1,  cysk_nucl 1,  golg_plas 1,  E.R._vacu 1,  E.R._plas 1  (predict for XP_040972797.1)
Subcellular
localization
TargetP
other 7  (predict for XP_016725301.2)
other 7  (predict for XP_040972797.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107937000
ath-u.5
for
SQS1
ath-u.5
for
SQS2
gma-u.5
for
547940
gma-u.5
for
100775983
vvi-u.5
for
100265798
ppo-u.5
for
7494303
ppo-u.5
for
7461247
mtr-u.5
for
11441556
sly-u.5
for
SQS1
sly-u.5
for
SQS4
osa-u.5
for
4342663
osa-u.5
for
4334492
zma-u.5
for
100191601
zma-u.5
for
541614


Ortholog ID: 3254
Species ghi ghi ath ath bra bra bna bna cit gma gma vvi ppo ppo mtr sly sot nta nta osa osa zma zma tae tae hvu sbi bdi bdi cre
Symbol LOC107928928 LOC107928014 SQS1 SQS2 LOC103834400 LOC103862364 LOC111214348 LOC106353454 LOC102577972 LOC100775983 LOC547940 LOC100265798 LOC7461247 LOC7494303 LOC11441556 SQS4 LOC102582345 LOC107759374 LOC107813695 LOC4342663 LOC4334492 LOC100191601 LOC541614 LOC123113831 LOC123123327 LOC123452848 LOC8061131 LOC100831520 LOC100825967 CHLRE_03g175250v5
Function* squalene synthase 2 squalene synthase 2 squalene synthase 1 squalene synthase 2 squalene synthase 1 squalene synthase 1 squalene synthase 1 inactive squalene synthase 2 squalene synthase 2 squalene synthase 2 squalene synthase squalene synthase 2 squalene synthase 1 squalene synthase 2 squalene synthase 2 squalene synthase-like squalene synthase-like squalene synthase-like squalene synthase-like squalene synthase 8 squalene synthase uncharacterized LOC100191601 squalene synthase 1 squalene synthase 1 squalene synthase 1 squalene synthase 1-like squalene synthase squalene synthase squalene synthase uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00100 Steroid biosynthesis 4
ghi00909 Sesquiterpenoid and triterpenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00100 Steroid biosynthesis 4
ghi00909 Sesquiterpenoid and triterpenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00900 Terpenoid backbone biosynthesis 6
ath00100 Steroid biosynthesis 4
ath00020 Citrate cycle (TCA cycle) 3
ath00280 Valine, leucine and isoleucine degradation 2
ath00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00460 Cyanoamino acid metabolism 2
ath00500 Starch and sucrose metabolism 2
ath00999 Biosynthesis of various plant secondary metabolites 2
ath00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 9
bra04120 Ubiquitin mediated proteolysis 3
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04145 Phagosome 5
bra04148 Efferocytosis 4
bra04144 Endocytosis 3
bra04141 Protein processing in endoplasmic reticulum 3
bra00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00100 Steroid biosynthesis 7
bna00909 Sesquiterpenoid and triterpenoid biosynthesis 7
bna04144 Endocytosis 3
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00061 Fatty acid biosynthesis 4
bna01040 Biosynthesis of unsaturated fatty acids 4
bna01212 Fatty acid metabolism 4
bna04141 Protein processing in endoplasmic reticulum 3
bna00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04016 MAPK signaling pathway - plant 3
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 5
gma00100 Steroid biosynthesis 3
gma00909 Sesquiterpenoid and triterpenoid biosynthesis 2
gma00190 Oxidative phosphorylation 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00999 Biosynthesis of various plant secondary metabolites 3
gma00100 Steroid biosynthesis 3
gma00909 Sesquiterpenoid and triterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04145 Phagosome 2
vvi04517 IgSF CAM signaling 2
vvi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 7
ppo04145 Phagosome 4
ppo00020 Citrate cycle (TCA cycle) 2
ppo00620 Pyruvate metabolism 2
ppo00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00900 Terpenoid backbone biosynthesis 2
ppo00100 Steroid biosynthesis 2
ppo01230 Biosynthesis of amino acids 2
ppo03030 DNA replication 2
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00909 Sesquiterpenoid and triterpenoid biosynthesis 3
mtr00230 Purine metabolism 2
mtr00240 Pyrimidine metabolism 2
mtr01232 Nucleotide metabolism 2
mtr00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03083 Polycomb repressive complex 2
sly04120 Ubiquitin mediated proteolysis 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00020 Citrate cycle (TCA cycle) 3
sot00900 Terpenoid backbone biosynthesis 3
sot00100 Steroid biosynthesis 2
sot00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00061 Fatty acid biosynthesis 4
nta00071 Fatty acid degradation 4
nta01212 Fatty acid metabolism 4
nta04146 Peroxisome 4
nta00100 Steroid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00061 Fatty acid biosynthesis 4
nta00071 Fatty acid degradation 4
nta01212 Fatty acid metabolism 4
nta04146 Peroxisome 4
nta00100 Steroid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00100 Steroid biosynthesis 3
zma00900 Terpenoid backbone biosynthesis 3
zma04142 Lysosome 2
zma00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00100 Steroid biosynthesis 3
zma00909 Sesquiterpenoid and triterpenoid biosynthesis 2
zma00280 Valine, leucine and isoleucine degradation 2
zma00650 Butanoate metabolism 2
zma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 5
tae04626 Plant-pathogen interaction 3
tae04136 Autophagy - other 3
tae00100 Steroid biosynthesis 3
tae00909 Sesquiterpenoid and triterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04626 Plant-pathogen interaction 3
tae00100 Steroid biosynthesis 3
tae00909 Sesquiterpenoid and triterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 5
sbi04145 Phagosome 5
sbi04142 Lysosome 4
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
bdi00100 Steroid biosynthesis 2
bdi00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00100 Steroid biosynthesis 2
bdi00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00100 Steroid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107928928 107928014 829616 829617 103834400 103862364 111214348 106353454 102577972 100775983 547940 100265798 7461247 7494303 11441556 101252241 102582345 107759374 107813695 4342663 4334492 100191601 541614 123113831 123123327 123452848 8061131 100831520 100825967 5728868
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