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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107937768   lysine-specific demethylase JMJ25 
 ghi-r.1   107893542   lysine-specific demethylase JMJ25 
 ghi-r.1   107891819   lysine-specific demethylase JMJ25 
 ghi-r.1   107888974   lysine-specific demethylase JMJ25 
 ath-u.5   IBM1   Transcription factor jumonji (jmjC) domain-containing protein 
 ath-u.5   B160   protein B160 
 ath-u.5   AT4G00990   Transcription factor jumonji (jmjC) domain-containing protein 
 bra-r.6   103859003   lysine-specific demethylase JMJ25 
 bra-r.6   103870649   lysine-specific demethylase JMJ25 
 bna-r.1   106452943   lysine-specific demethylase JMJ25-like 
 bna-r.1   111212007   lysine-specific demethylase JMJ25 
 bna-r.1   111214041   lysine-specific demethylase JMJ25-like 
 cit-r.1   102618372   lysine-specific demethylase JMJ26 
 cit-r.1   102627530   uncharacterized LOC102627530 
 gma-u.5   100787798   lysine-specific demethylase JMJ25 
 gma-u.5   100780803   putative JmjC domain-containing histone demethylase 
 gma-u.5   100805723   lysine-specific demethylase JMJ25 
 vvi-u.5   100250303   lysine-specific demethylase JMJ26 
 vvi-u.5   100258626   lysine-specific demethylase JMJ27 
 ppo-u.5   112323367   lysine-specific demethylase JMJ26 
 ppo-u.5   7486369   lysine-specific demethylase JMJ25 
 ppo-u.5   18097336   lysine-specific demethylase JMJ26 
 mtr-u.5   11431621   lysine-specific demethylase JMJ25 
 mtr-u.5   11429788   uncharacterized LOC11429788 
 mtr-u.5   11433685   lysine-specific demethylase JMJ25 
 sly-u.5   101266484   lysine-specific demethylase JMJ28 
 sly-u.5   101265193   lysine-specific demethylase JMJ26 
 sly-u.5   101254269   lysine-specific demethylase JMJ26 
 sot-r.1   102602507   uncharacterized LOC102602507 
 sot-r.1   102601654   lysine-specific demethylase JMJ25-like 
 sot-r.1   102601383   lysine-specific demethylase JMJ25 
 nta-r.1   107760914   lysine-specific demethylase JMJ29 
 nta-r.1   107763131   uncharacterized LOC107763131 
 nta-r.1   107781452   lysine-specific demethylase JMJ29 
 osa-u.5   4328036   lysine-specific demethylase JMJ27 
 osa-u.5   4331234   lysine-specific demethylase JMJ27 
 osa-u.5   4333174   lysine-specific demethylase JMJ27 
 zma-u.5   103643664   Transcription factor jumonji (jmjC) domain-containing protein 
 zma-u.5   100280238   putative jumonji-like transcription factor family protein 
 zma-u.5   103654986   putative jumonji-like transcription factor family protein 
 tae-r.2   123135497   lysine-specific demethylase JMJ25 
 tae-r.2   123143072   lysine-specific demethylase JMJ25 
 hvu-r.1   123395900   lysine-specific demethylase JMJ25-like 
 sbi-r.1   8055790   lysine-specific demethylase JMJ25 
 sbi-r.1   8056244   lysine-specific demethylase JMJ25 
 sbi-r.1   8064531   lysine-specific demethylase JMJ25 
 bdi-r.1   100822574   lysine-specific demethylase JMJ25 
 bdi-r.1   100824316   lysine-specific demethylase JMJ25-like 
 cre-r.1   CHLRE_10g446850v5   uncharacterized protein 

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Top 50 coexpressed genes to 107937768 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107937768 (ghi-r.1 coexpression data)

CoexMap"107937768"


ghiLOC107937768 | Entrez gene ID : 107937768    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 2 3 2 3 2 3 3 3 3 3 3 3 2 1 3 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (1121 genes)  IEA  
GO CC
GO:0000118 [list] [network] histone deacetylase complex  (92 genes)  IEA  
GO:0000785 [list] [network] chromatin  (561 genes)  IEA  
GO MF
GO:0032454 [list] [network] histone H3K9 demethylase activity  (24 genes)  IEA  
GO:0031490 [list] [network] chromatin DNA binding  (80 genes)  IEA  
GO:0003712 [list] [network] transcription coregulator activity  (295 genes)  IEA  
Protein XP_016726220.1 [sequence] [blastp]
XP_016726222.1 [sequence] [blastp]
XP_016726224.1 [sequence] [blastp]
XP_016726226.1 [sequence] [blastp]
XP_040958639.1 [sequence] [blastp]
XP_040958640.1 [sequence] [blastp]
XP_040958641.1 [sequence] [blastp]
XP_040958642.1 [sequence] [blastp]
XP_040958643.1 [sequence] [blastp]
XP_040958644.1 [sequence] [blastp]
XP_040958645.1 [sequence] [blastp]
XP_040958646.1 [sequence] [blastp]
XP_040958647.1 [sequence] [blastp]
XP_040958648.1 [sequence] [blastp]
XP_040958649.1 [sequence] [blastp]
XP_040958650.1 [sequence] [blastp]
XP_040958651.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_016726220.1)
nucl 9  (predict for XP_016726222.1)
nucl 9  (predict for XP_016726224.1)
nucl 9  (predict for XP_016726226.1)
nucl 9  (predict for XP_040958639.1)
nucl 9  (predict for XP_040958640.1)
nucl 9  (predict for XP_040958641.1)
nucl 9  (predict for XP_040958642.1)
nucl 9  (predict for XP_040958643.1)
nucl 9  (predict for XP_040958644.1)
nucl 9  (predict for XP_040958645.1)
nucl 9  (predict for XP_040958646.1)
nucl 9  (predict for XP_040958647.1)
nucl 9  (predict for XP_040958648.1)
nucl 9  (predict for XP_040958649.1)
nucl 9  (predict for XP_040958650.1)
nucl 9  (predict for XP_040958651.1)
Subcellular
localization
TargetP
other 8  (predict for XP_016726220.1)
other 8  (predict for XP_016726222.1)
other 8  (predict for XP_016726224.1)
other 8  (predict for XP_016726226.1)
other 8  (predict for XP_040958639.1)
other 8  (predict for XP_040958640.1)
other 8  (predict for XP_040958641.1)
other 8  (predict for XP_040958642.1)
other 8  (predict for XP_040958643.1)
other 8  (predict for XP_040958644.1)
other 8  (predict for XP_040958645.1)
other 8  (predict for XP_040958646.1)
other 8  (predict for XP_040958647.1)
other 8  (predict for XP_040958648.1)
other 8  (predict for XP_040958649.1)
other 8  (predict for XP_040958650.1)
other 8  (predict for XP_040958651.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107937768
ghi-r.1
for
107893542
ghi-r.1
for
107891819
ghi-r.1
for
107888974
ath-u.5
for
IBM1
ath-u.5
for
B160
ath-u.5
for
AT4G00990
bra-r.6
for
103859003
bra-r.6
for
103870649
bna-r.1
for
106452943
bna-r.1
for
111212007
bna-r.1
for
111214041
cit-r.1
for
102618372
cit-r.1
for
102627530
gma-u.5
for
100787798
gma-u.5
for
100780803
gma-u.5
for
100805723
vvi-u.5
for
100250303
vvi-u.5
for
100258626
ppo-u.5
for
112323367
ppo-u.5
for
7486369
ppo-u.5
for
18097336
mtr-u.5
for
11431621
mtr-u.5
for
11429788
mtr-u.5
for
11433685
sly-u.5
for
101266484
sly-u.5
for
101265193
sly-u.5
for
101254269
sot-r.1
for
102602507
sot-r.1
for
102601654
sot-r.1
for
102601383
nta-r.1
for
107760914
nta-r.1
for
107763131
nta-r.1
for
107781452
osa-u.5
for
4328036
osa-u.5
for
4331234
osa-u.5
for
4333174
zma-u.5
for
103643664
zma-u.5
for
100280238
zma-u.5
for
103654986
tae-r.2
for
123135497
tae-r.2
for
123143072
hvu-r.1
for
123395900
sbi-r.1
for
8055790
sbi-r.1
for
8056244
sbi-r.1
for
8064531
bdi-r.1
for
100822574
bdi-r.1
for
100824316
cre-r.1
for
CHLRE_10g446850v5


Ortholog ID: 405
Species ghi ghi ghi ath ath ath bra bra bra bna bna bna cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot nta nta nta osa osa zma zma zma tae tae hvu sbi sbi bdi bdi cre
Symbol LOC107893542 LOC107886373 LOC107920142 AT4G00990 AT1G11950 AT1G62310 LOC103859003 LOC103858823 LOC103836196 LOC106365732 LOC106384149 LOC106417203 LOC102618372 LOC102608274 LOC100780803 LOC100799234 LOC112997634 LOC100250303 LOC100258626 LOC100247074 LOC112323367 LOC7496997 LOC7477121 LOC11443736 LOC11444490 LOC11445522 LOC101266484 LOC101265193 LOC101252668 LOC102602507 LOC102579336 LOC107760914 LOC107783445 LOC107807497 LOC4328036 LOC4346966 LOC103643664 LOC103654986 LOC115072891 LOC123135497 LOC123131680 LOC123395900 LOC8056244 LOC8064531 LOC100822574 LOC100830519 CHLRE_10g446850v5
Function* lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 Transcription factor jumonji (jmjC) domain-containing protein Transcription factor jumonji (jmjC) domain-containing protein transcription factor jumonji (jmjC) domain-containing protein lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25-like lysine-specific demethylase JMJ25-like lysine-specific demethylase JMJ26 lysine-specific demethylase JMJ28 putative JmjC domain-containing histone demethylase lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ26 lysine-specific demethylase JMJ27 uncharacterized LOC100247074 lysine-specific demethylase JMJ26 lysine-specific demethylase JMJ28 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ28 lysine-specific demethylase JMJ26 lysine-specific demethylase JMJ28-like uncharacterized LOC102602507 microtubule-associated protein futsch-like lysine-specific demethylase JMJ29 lysine-specific demethylase JMJ29-like lysine-specific demethylase JMJ29-like lysine-specific demethylase JMJ27 lysine-specific demethylase JMJ26 Transcription factor jumonji (jmjC) domain-containing protein putative jumonji-like transcription factor family protein zinc-finger domain transcription factor lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25-like lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 3
ghi04141 Protein processing in endoplasmic reticulum 2
ghi00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 3
ghi00061 Fatty acid biosynthesis 3
ghi01040 Biosynthesis of unsaturated fatty acids 3
ghi01212 Fatty acid metabolism 3
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 4
bra04148 Efferocytosis 4
bra04145 Phagosome 3
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
bra03082 ATP-dependent chromatin remodeling 2
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00561 Glycerolipid metabolism 2
bna00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 4
bna03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 3
cit00620 Pyruvate metabolism 2
cit00710 Carbon fixation by Calvin cycle 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03013 Nucleocytoplasmic transport 2
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 7
ppo00230 Purine metabolism 2
ppo00240 Pyrimidine metabolism 2
ppo00480 Glutathione metabolism 2
ppo01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00250 Alanine, aspartate and glutamate metabolism 3
mtr01230 Biosynthesis of amino acids 3
mtr00910 Nitrogen metabolism 3
mtr00195 Photosynthesis 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 2
osa05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00010 Glycolysis / Gluconeogenesis 5
zma00270 Cysteine and methionine metabolism 2
zma00620 Pyruvate metabolism 2
zma00030 Pentose phosphate pathway 2
zma00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03082 ATP-dependent chromatin remodeling 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi03040 Spliceosome 2
sbi03015 mRNA surveillance pathway 2
sbi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
sbi03420 Nucleotide excision repair 2
sbi04814 Motor proteins 2
sbi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00230 Purine metabolism 2
bdi00240 Pyrimidine metabolism 2
bdi00480 Glutathione metabolism 2
bdi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03040 Spliceosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107893542 107886373 107920142 827933 837747 842529 103859003 103858823 103836196 106365732 106384149 106417203 102618372 102608274 100780803 100799234 112997634 100250303 100258626 100247074 112323367 7496997 7477121 11443736 11444490 11445522 101266484 101265193 101252668 102602507 102579336 107760914 107783445 107807497 4328036 4346966 103643664 103654986 115072891 123135497 123131680 123395900 8056244 8064531 100822574 100830519 5723853
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