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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107938442   oligoribonuclease 
 ghi-r.1   107936060   oligoribonuclease 
 ghi-r.1   107932502   oligoribonuclease 
 ghi-r.1   107898394   oligoribonuclease 
 ath-u.5   AT2G26970   Polynucleotidyl transferase, ribonuclease H-like superfamily protein 
 bra-r.6   103836710   oligoribonuclease 
 bna-r.1   106392266   oligoribonuclease 
 bna-r.1   106426700   oligoribonuclease-like 
 cit-r.1   102621451   oligoribonuclease 
 gma-u.5   100795445   oligoribonuclease 
 gma-u.5   100527858   Orn domain-containing protein 
 vvi-u.5   100251263   oligoribonuclease 
 ppo-u.5   18094943   oligoribonuclease 
 mtr-u.5   25494927   oligoribonuclease 
 sly-u.5   101264943   oligoribonuclease 
 sot-r.1   102587584   oligoribonuclease 
 nta-r.1   107795698   oligoribonuclease 
 nta-r.1   107783602   oligoribonuclease-like 
 nta-r.1   107788483   oligoribonuclease-like 
 osa-u.5   9270337   oligoribonuclease 
 osa-u.5   4329319   oligoribonuclease 
 zma-u.5   100192839   uncharacterized LOC100192839 
 tae-r.2   123129071   oligoribonuclease 
 tae-r.2   123053039   oligoribonuclease 
 tae-r.2   123188947   oligoribonuclease 
 hvu-r.1   123402941   oligoribonuclease-like 
 hvu-r.1   123426427   oligoribonuclease-like 
 sbi-r.1   8077814   oligoribonuclease 
 bdi-r.1   100828865   oligoribonuclease 
 bdi-r.1   100832260   oligoribonuclease 
 cre-r.1   CHLRE_10g425800v5   uncharacterized protein 

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Top 50 coexpressed genes to 107938442 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107938442 (ghi-r.1 coexpression data)

CoexMap"107938442"


ghiLOC107938442 | Entrez gene ID : 107938442    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 1 2 1 2 1 1 1 1 1 3 2 1 3 2 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03008 [list] [network] Ribosome biogenesis in eukaryotes (1571 genes)
GO BP
GO CC
GO:0005739 [list] [network] mitochondrion  (1525 genes)  IEA  
GO MF
GO:0000175 [list] [network] 3'-5'-RNA exonuclease activity  (88 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (9083 genes)  IEA  
Protein XP_016727099.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 3,  nucl 1,  cyto_E.R. 1  (predict for XP_016727099.1)
Subcellular
localization
TargetP
other 7,  chlo 4  (predict for XP_016727099.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107938442
ghi-r.1
for
107936060
ghi-r.1
for
107932502
ghi-r.1
for
107898394
ath-u.5
for
AT2G26970
bra-r.6
for
103836710
bna-r.1
for
106392266
bna-r.1
for
106426700
cit-r.1
for
102621451
gma-u.5
for
100795445
gma-u.5
for
100527858
vvi-u.5
for
100251263
ppo-u.5
for
18094943
mtr-u.5
for
25494927
sly-u.5
for
101264943
sot-r.1
for
102587584
nta-r.1
for
107795698
nta-r.1
for
107783602
nta-r.1
for
107788483
osa-u.5
for
9270337
osa-u.5
for
4329319
zma-u.5
for
100192839
tae-r.2
for
123129071
tae-r.2
for
123053039
tae-r.2
for
123188947
hvu-r.1
for
123402941
hvu-r.1
for
123426427
sbi-r.1
for
8077814
bdi-r.1
for
100828865
bdi-r.1
for
100832260
cre-r.1
for
CHLRE_10g425800v5


Ortholog ID: 5067
Species ghi ghi ghi ath bra bna bna cit gma gma vvi ppo mtr sly sot nta nta nta osa osa zma tae tae hvu hvu sbi bdi bdi cre
Symbol LOC107936060 LOC107898394 LOC107930928 AT2G26970 LOC103836710 LOC106392266 LOC106426700 LOC102621451 LOC100795445 LOC100527858 LOC100251263 LOC18094943 LOC25494927 LOC101264943 LOC102587584 LOC107783602 LOC107790264 LOC107777565 LOC9270337 LOC4329319 LOC100192839 LOC123146242 LOC123045202 LOC123402941 LOC123426427 LOC8077814 LOC100828865 LOC100832260 CHLRE_10g425800v5
Function* oligoribonuclease oligoribonuclease oligoribonuclease Polynucleotidyl transferase, ribonuclease H-like superfamily protein oligoribonuclease oligoribonuclease oligoribonuclease-like oligoribonuclease oligoribonuclease Orn domain-containing protein oligoribonuclease oligoribonuclease oligoribonuclease oligoribonuclease oligoribonuclease oligoribonuclease-like oligoribonuclease oligoribonuclease oligoribonuclease oligoribonuclease uncharacterized LOC100192839 oligoribonuclease oligoribonuclease oligoribonuclease-like oligoribonuclease-like oligoribonuclease oligoribonuclease oligoribonuclease uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03050 Proteasome 4
ghi00310 Lysine degradation 2
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03050 Proteasome 4
ghi00310 Lysine degradation 2
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
bna04120 Ubiquitin mediated proteolysis 2
bna03008 Ribosome biogenesis in eukaryotes 2
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 9
bna03013 Nucleocytoplasmic transport 4
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
gma03008 Ribosome biogenesis in eukaryotes 2
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
gma03008 Ribosome biogenesis in eukaryotes 2
gma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
sot03008 Ribosome biogenesis in eukaryotes 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta03010 Ribosome 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03008 Ribosome biogenesis in eukaryotes 3
nta03010 Ribosome 2
nta03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 3
tae03040 Spliceosome 3
tae00330 Arginine and proline metabolism 3
tae04517 IgSF CAM signaling 3
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 2
hvu03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
bdi00240 Pyrimidine metabolism 2
bdi01232 Nucleotide metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107936060 107898394 107930928 817238 103836710 106392266 106426700 102621451 100795445 100527858 100251263 18094943 25494927 101264943 102587584 107783602 107790264 107777565 9270337 4329319 100192839 123146242 123045202 123402941 123426427 8077814 100828865 100832260 5728189
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