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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107938908   pentatricopeptide repeat-containing protein At1g74850, chloroplastic 
 ghi-r.1   107935070   pentatricopeptide repeat-containing protein At1g01970 
 ath-u.5   NFD5   pentatricopeptide (PPR) repeat-containing protein 
 bra-r.6   103872756   protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial 
 bna-r.1   106401174   protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial 
 bna-r.1   106346951   protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial 
 bna-r.1   125594900   protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial-like 
 cit-r.1   102614427   protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial 
 gma-u.5   100801933   pentatricopeptide repeat-containing protein At2g18940, chloroplastic 
 gma-u.5   100794017   uncharacterized LOC100794017 
 vvi-u.5   100267767   small ribosomal subunit protein mS77 (rPPR2) 
 ppo-u.5   7477616   pentatricopeptide repeat-containing protein At2g35130 
 mtr-u.5   25482154   uncharacterized LOC25482154 
 sly-u.5   101261041   pentatricopeptide repeat-containing protein At2g32630-like 
 sly-u.5   101261632   pentatricopeptide repeat-containing protein CRP1, chloroplastic-like 
 sot-r.1   102601772   pentatricopeptide repeat-containing protein At5g12100, mitochondrial 
 nta-r.1   107797256   uncharacterized LOC107797256 
 nta-r.1   107818540   uncharacterized LOC107818540 
 osa-u.5   4329957   pentatricopeptide repeat-containing protein At5g61990, mitochondrial 
 zma-u.5   100191497   uncharacterized LOC100191497 
 tae-r.2   123137445   pentatricopeptide repeat-containing protein At1g01970 
 tae-r.2   123144792   pentatricopeptide repeat-containing protein At1g01970 
 tae-r.2   123127680   pentatricopeptide repeat-containing protein At1g01970 
 hvu-r.1   123401353   pentatricopeptide repeat-containing protein At1g01970 
 sbi-r.1   8059671   pentatricopeptide repeat-containing protein At5g04810, chloroplastic 
 bdi-r.1   100834819   pentatricopeptide repeat-containing protein At1g01970 

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Top 50 coexpressed genes to 107938908 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107938908 (ghi-r.1 coexpression data)

CoexMap"107938908"


ghiLOC107938908 | Entrez gene ID : 107938908    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 3 1 2 1 1 1 2 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016727644.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 5,  mito 4  (predict for XP_016727644.2)
Subcellular
localization
TargetP
chlo 6  (predict for XP_016727644.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107938908
ghi-r.1
for
107935070
ath-u.5
for
NFD5
bra-r.6
for
103872756
bna-r.1
for
106401174
bna-r.1
for
106346951
bna-r.1
for
125594900
cit-r.1
for
102614427
gma-u.5
for
100801933
gma-u.5
for
100794017
vvi-u.5
for
100267767
ppo-u.5
for
7477616
mtr-u.5
for
25482154
sly-u.5
for
101261041
sly-u.5
for
101261632
sot-r.1
for
102601772
nta-r.1
for
107797256
nta-r.1
for
107818540
osa-u.5
for
4329957
zma-u.5
for
100191497
tae-r.2
for
123137445
tae-r.2
for
123144792
tae-r.2
for
123127680
hvu-r.1
for
123401353
sbi-r.1
for
8059671
bdi-r.1
for
100834819


Ortholog ID: 9788
Species ghi ghi ath bra bna bna bna cit gma gma vvi ppo mtr sly sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC107938908 LOC107935070 NFD5 LOC103872756 LOC106401174 LOC106346951 LOC125594900 LOC102614427 LOC100801933 LOC100794017 LOC100267767 LOC7477616 LOC25482154 LOC101261041 LOC101261632 LOC102601772 LOC107797256 LOC107818540 LOC4329957 LOC100191497 LOC123137445 LOC123144792 LOC123127680 LOC123401353 LOC8059671 LOC100834819
Function* pentatricopeptide repeat-containing protein At1g74850, chloroplastic pentatricopeptide repeat-containing protein At1g01970 pentatricopeptide (PPR) repeat-containing protein protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial-like protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial pentatricopeptide repeat-containing protein At2g18940, chloroplastic uncharacterized LOC100794017 small ribosomal subunit protein mS77 (rPPR2) pentatricopeptide repeat-containing protein At2g35130 uncharacterized LOC25482154 pentatricopeptide repeat-containing protein At2g32630-like pentatricopeptide repeat-containing protein CRP1, chloroplastic-like pentatricopeptide repeat-containing protein At5g12100, mitochondrial uncharacterized LOC107797256 uncharacterized LOC107818540 pentatricopeptide repeat-containing protein At5g61990, mitochondrial uncharacterized LOC100191497 pentatricopeptide repeat-containing protein At1g01970 pentatricopeptide repeat-containing protein At1g01970 pentatricopeptide repeat-containing protein At1g01970 pentatricopeptide repeat-containing protein At1g01970 pentatricopeptide repeat-containing protein At5g04810, chloroplastic pentatricopeptide repeat-containing protein At1g01970
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 6
ppo03018 RNA degradation 4
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00220 Arginine biosynthesis 3
nta00240 Pyrimidine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00220 Arginine biosynthesis 3
nta00240 Pyrimidine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01240 Biosynthesis of cofactors 3
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
osa03010 Ribosome 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107938908 107935070 838538 103872756 106401174 106346951 125594900 102614427 100801933 100794017 100267767 7477616 25482154 101261041 101261632 102601772 107797256 107818540 4329957 100191497 123137445 123144792 123127680 123401353 8059671 100834819
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