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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107939488   transcription initiation factor TFIID subunit 15 
 ath-u.5   AT4G28990   RNA-binding protein-like protein 
 gma-u.5   100817587   uncharacterized LOC100817587 
 gma-u.5   100799651   RNA-binding protein EWS 
 vvi-u.5   100250827   transcription initiation factor TFIID subunit 15b 
 ppo-u.5   18100420   uncharacterized LOC18100420 
 ppo-u.5   7476292   uncharacterized LOC7476292 
 mtr-u.5   11438547   uncharacterized LOC11438547 
 sly-u.5   101267115   uncharacterized LOC101267115 
 osa-u.5   4340930   uncharacterized LOC4340930 
 osa-u.5   4328998   uncharacterized LOC4328998 
 zma-u.5   100280706   uncharacterized LOC100280706 

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Top 50 coexpressed genes to 107939488 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107939488 (ghi-r.1 coexpression data)

CoexMap"107939488"


ghiLOC107939488 | Entrez gene ID : 107939488    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 1 2 1 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (4318 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0003712 [list] [network] transcription coregulator activity  (295 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
Protein XP_016728314.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  pero 1,  cyto 1,  extr 1  (predict for XP_016728314.1)
Subcellular
localization
TargetP
other 8  (predict for XP_016728314.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107939488
ath-u.5
for
AT4G28990
gma-u.5
for
100817587
gma-u.5
for
100799651
vvi-u.5
for
100250827
ppo-u.5
for
18100420
ppo-u.5
for
7476292
mtr-u.5
for
11438547
sly-u.5
for
101267115
osa-u.5
for
4340930
osa-u.5
for
4328998
zma-u.5
for
100280706


Ortholog ID: 7680
Species ghi ghi ath bra bna bna cit gma gma vvi ppo ppo mtr sly sot nta nta osa osa zma tae tae hvu sbi bdi
Symbol LOC107939488 LOC107932860 AT4G28990 LOC103853943 LOC106407436 LOC125610037 LOC102624215 LOC100799651 LOC100817587 LOC100250827 LOC7476292 LOC18100420 LOC11438547 LOC101267115 LOC102579998 LOC107811343 LOC107798755 LOC4328998 LOC4340930 LOC100280706 LOC123147845 LOC123160704 LOC123413391 LOC8060119 LOC100846488
Function* transcription initiation factor TFIID subunit 15 transcription initiation factor TFIID subunit 15 RNA-binding protein-like protein uncharacterized LOC103853943 pollen-specific leucine-rich repeat extensin-like protein 3 uncharacterized LOC125610037 transcription initiation factor TFIID subunit 15 RNA-binding protein EWS uncharacterized LOC100817587 transcription initiation factor TFIID subunit 15b uncharacterized LOC7476292 uncharacterized LOC18100420 uncharacterized LOC11438547 uncharacterized LOC101267115 RNA-binding protein EWS uncharacterized LOC107811343 uncharacterized LOC107798755 uncharacterized LOC4328998 uncharacterized LOC4340930 uncharacterized LOC100280706 serine/arginine repetitive matrix protein 1 serine/arginine repetitive matrix protein 1 serine/arginine repetitive matrix protein 1 serine/arginine repetitive matrix protein 1 TATA-binding protein-associated factor 2N
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 7
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
bra03040 Spliceosome 3
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
bna03013 Nucleocytoplasmic transport 4
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 5
bna03018 RNA degradation 4
bna03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04626 Plant-pathogen interaction 2
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 7
bdi03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107939488 107932860 829020 103853943 106407436 125610037 102624215 100799651 100817587 100250827 7476292 18100420 11438547 101267115 102579998 107811343 107798755 4328998 4340930 100280706 123147845 123160704 123413391 8060119 100846488
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