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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107940215   tryptophan synthase alpha chain 
 ghi-r.1   107936474   tryptophan synthase alpha chain 
 ath-u.5   TSA1   tryptophan synthase alpha chain 
 ath-u.5   AT4G02610   Aldolase-type TIM barrel family protein 
 bra-r.6   103841367   tryptophan synthase alpha chain, chloroplastic 
 bra-r.6   103836728   tryptophan synthase alpha chain 
 bna-r.1   106415239   tryptophan synthase alpha chain, chloroplastic 
 bna-r.1   106415880   tryptophan synthase alpha chain, chloroplastic 
 bna-r.1   106426750   tryptophan synthase alpha chain 
 cit-r.1   102608777   tryptophan synthase alpha chain-like 
 cit-r.1   102608720   tryptophan synthase alpha chain-like 
 gma-u.5   TSA   tryptophan synthase alpha chain 
 gma-u.5   100808400   tryptophan synthase alpha chain 
 vvi-u.5   100252844   tryptophan synthase alpha chain 
 ppo-u.5   7476880   tryptophan synthase alpha chain 
 ppo-u.5   7472004   tryptophan synthase alpha chain 
 mtr-u.5   25499341   tryptophan synthase alpha chain 
 mtr-u.5   25499196   tryptophan synthase alpha chain 
 sly-u.5   101255433   tryptophan synthase alpha chain 
 sot-r.1   102592296   tryptophan synthase alpha chain 
 nta-r.1   107814357   tryptophan synthase alpha chain 
 nta-r.1   107787718   tryptophan synthase alpha chain-like 
 nta-r.1   107823799   tryptophan synthase alpha chain 
 osa-u.5   4342571   tryptophan synthase alpha chain 
 osa-u.5   9270552   indole-3-glycerol phosphate lyase, chloroplastic 
 osa-u.5   9268807   tryptophan synthase alpha chain 
 zma-u.5   100273163   uncharacterized LOC100273163 
 zma-u.5   103644182   indole-3-glycerol phosphate lyase, chloroplastic-like 
 zma-u.5   100170238   tryptophan synthase alpha 
 tae-r.2   123057652   indole-3-glycerol phosphate lyase, chloroplastic 
 tae-r.2   123064487   indole-3-glycerol phosphate lyase, chloroplastic 
 tae-r.2   123070244   tryptophan synthase alpha chain 
 hvu-r.1   123452336   tryptophan synthase alpha chain-like 
 hvu-r.1   123442434   indole-3-glycerol phosphate lyase, chloroplastic-like 
 hvu-r.1   123452721   tryptophan synthase alpha chain-like 
 sbi-r.1   8061167   indole-3-glycerol phosphate lyase, chloroplastic 
 sbi-r.1   8056620   tryptophan synthase alpha chain 
 bdi-r.1   100834829   tryptophan synthase alpha chain 
 bdi-r.1   100838412   tryptophan synthase alpha chain 
 bdi-r.1   100843076   indole-3-glycerol phosphate lyase, chloroplastic 
 cre-r.1   CHLRE_12g528700v5   uncharacterized protein 

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Top 50 coexpressed genes to 107940215 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107940215 (ghi-r.1 coexpression data)

CoexMap"107940215"


ghiLOC107940215 | Entrez gene ID : 107940215    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 2 2 3 2 2 1 2 2 1 1 3 3 3 3 3 2 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00260 [list] [network] Glycine, serine and threonine metabolism (150 genes)
ghi00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (103 genes)
ghi01230 [list] [network] Biosynthesis of amino acids (568 genes)
GO BP
GO:0000162 [list] [network] L-tryptophan biosynthetic process  (27 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (1647 genes)  IEA  
GO:0005829 [list] [network] cytosol  (2580 genes)  IEA  
GO MF
GO:0004834 [list] [network] tryptophan synthase activity  (8 genes)  IEA  
Protein XP_016729141.1 [sequence] [blastp]
XP_016729142.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_016729141.1)
chlo 9  (predict for XP_016729142.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_016729141.1)
chlo 8  (predict for XP_016729142.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107940215
ghi-r.1
for
107936474
ath-u.5
for
TSA1
ath-u.5
for
AT4G02610
bra-r.6
for
103841367
bra-r.6
for
103836728
bna-r.1
for
106415239
bna-r.1
for
106415880
bna-r.1
for
106426750
cit-r.1
for
102608777
cit-r.1
for
102608720
gma-u.5
for
TSA
gma-u.5
for
100808400
vvi-u.5
for
100252844
ppo-u.5
for
7476880
ppo-u.5
for
7472004
mtr-u.5
for
25499341
mtr-u.5
for
25499196
sly-u.5
for
101255433
sot-r.1
for
102592296
nta-r.1
for
107814357
nta-r.1
for
107787718
nta-r.1
for
107823799
osa-u.5
for
4342571
osa-u.5
for
9270552
osa-u.5
for
9268807
zma-u.5
for
100273163
zma-u.5
for
103644182
zma-u.5
for
100170238
tae-r.2
for
123057652
tae-r.2
for
123064487
tae-r.2
for
123070244
hvu-r.1
for
123452336
hvu-r.1
for
123442434
hvu-r.1
for
123452721
sbi-r.1
for
8061167
sbi-r.1
for
8056620
bdi-r.1
for
100834829
bdi-r.1
for
100838412
bdi-r.1
for
100843076
cre-r.1
for
CHLRE_12g528700v5


Ortholog ID: 3237
Species ghi ghi ath ath bra bra bna bna bna cit cit gma gma vvi ppo ppo mtr mtr sly sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi bdi bdi bdi cre
Symbol LOC107940215 LOC107936474 TSA1 AT4G02610 LOC103841367 LOC103836728 LOC106415239 LOC106415880 LOC106426750 LOC102608777 LOC102608720 TSA LOC100808400 LOC100252844 LOC7476880 LOC7472004 LOC25499341 LOC25499196 LOC101255433 LOC102592296 LOC107814357 LOC107787718 LOC107823799 LOC4342571 LOC9270552 LOC9268807 LOC100273163 LOC103644182 LOC103644181 LOC123070244 LOC123123212 LOC123149077 LOC123452336 LOC123442434 LOC123452721 LOC8061167 LOC8056620 LOC100834829 LOC100838412 LOC100832579 CHLRE_12g528700v5
Function* tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain Aldolase-type TIM barrel family protein tryptophan synthase alpha chain, chloroplastic tryptophan synthase alpha chain tryptophan synthase alpha chain, chloroplastic tryptophan synthase alpha chain, chloroplastic tryptophan synthase alpha chain tryptophan synthase alpha chain-like tryptophan synthase alpha chain-like tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain-like tryptophan synthase alpha chain tryptophan synthase alpha chain indole-3-glycerol phosphate lyase, chloroplastic tryptophan synthase alpha chain uncharacterized LOC100273163 indole-3-glycerol phosphate lyase, chloroplastic-like tryptophan synthase alpha chain, chloroplastic tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain-like indole-3-glycerol phosphate lyase, chloroplastic-like tryptophan synthase alpha chain-like indole-3-glycerol phosphate lyase, chloroplastic tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 5
ghi00260 Glycine, serine and threonine metabolism 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 5
ghi00260 Glycine, serine and threonine metabolism 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 11
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
ath00260 Glycine, serine and threonine metabolism 6
ath00270 Cysteine and methionine metabolism 5
ath01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00541 Biosynthesis of various nucleotide sugars 2
ath01250 Biosynthesis of nucleotide sugars 2
ath00561 Glycerolipid metabolism 2
ath01200 Carbon metabolism 2
ath01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 13
bra00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
bra00260 Glycine, serine and threonine metabolism 6
bra00270 Cysteine and methionine metabolism 4
bra01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00100 Steroid biosynthesis 2
bra00020 Citrate cycle (TCA cycle) 2
bra00270 Cysteine and methionine metabolism 2
bra01200 Carbon metabolism 2
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 14
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
bna00260 Glycine, serine and threonine metabolism 7
bna00270 Cysteine and methionine metabolism 5
bna00750 Vitamin B6 metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 13
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
bna00260 Glycine, serine and threonine metabolism 6
bna00270 Cysteine and methionine metabolism 4
bna00750 Vitamin B6 metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00190 Oxidative phosphorylation 5
bna04145 Phagosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 5
gma00260 Glycine, serine and threonine metabolism 3
gma01230 Biosynthesis of amino acids 3
gma00190 Oxidative phosphorylation 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 6
gma03050 Proteasome 4
gma00260 Glycine, serine and threonine metabolism 2
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
gma00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 8
vvi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 2
ppo03010 Ribosome 2
ppo00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr03020 RNA polymerase 2
mtr03420 Nucleotide excision repair 2
mtr03050 Proteasome 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 10
mtr01230 Biosynthesis of amino acids 3
mtr00260 Glycine, serine and threonine metabolism 2
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 7
sly00340 Histidine metabolism 3
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
sly00250 Alanine, aspartate and glutamate metabolism 2
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 6
sot00290 Valine, leucine and isoleucine biosynthesis 3
sot00770 Pantothenate and CoA biosynthesis 3
sot01210 2-Oxocarboxylic acid metabolism 3
sot01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
nta00260 Glycine, serine and threonine metabolism 3
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
nta01230 Biosynthesis of amino acids 3
nta00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 4
nta01240 Biosynthesis of cofactors 4
nta00260 Glycine, serine and threonine metabolism 3
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
nta01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 3
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
nta01230 Biosynthesis of amino acids 3
nta03060 Protein export 2
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 11
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis 10
osa00260 Glycine, serine and threonine metabolism 3
osa00350 Tyrosine metabolism 3
osa00360 Phenylalanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 3
osa00402 Benzoxazinoid biosynthesis 2
osa00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00900 Terpenoid backbone biosynthesis 2
osa00402 Benzoxazinoid biosynthesis 2
osa00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00402 Benzoxazinoid biosynthesis 2
zma00999 Biosynthesis of various plant secondary metabolites 2
zma00909 Sesquiterpenoid and triterpenoid biosynthesis 2
zma00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00402 Benzoxazinoid biosynthesis 2
zma00999 Biosynthesis of various plant secondary metabolites 2
zma00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00260 Glycine, serine and threonine metabolism 2
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
zma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 15
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 13
tae00260 Glycine, serine and threonine metabolism 6
tae04075 Plant hormone signal transduction 3
tae04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 14
tae01230 Biosynthesis of amino acids 14
tae00260 Glycine, serine and threonine metabolism 6
tae04075 Plant hormone signal transduction 2
tae04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 10
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
hvu00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
hvu01200 Carbon metabolism 2
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
sbi01230 Biosynthesis of amino acids 9
sbi00380 Tryptophan metabolism 3
sbi00260 Glycine, serine and threonine metabolism 2
sbi00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00591 Linoleic acid metabolism 3
bdi00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 8
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
bdi00260 Glycine, serine and threonine metabolism 3
bdi00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
cre01230 Biosynthesis of amino acids 4
cre00260 Glycine, serine and threonine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107940215 107936474 824629 828226 103841367 103836728 106415239 106415880 106426750 102608777 102608720 732610 100808400 100252844 7476880 7472004 25499341 25499196 101255433 102592296 107814357 107787718 107823799 4342571 9270552 9268807 100273163 103644182 103644181 123070244 123123212 123149077 123452336 123442434 123452721 8061167 8056620 100834829 100838412 100832579 5722439
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