ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107940648	ribonuclease 3
ghi-r.1	107902274	extracellular ribonuclease LE
ghi-r.1	107940649	ribonuclease 1
ath-u.5	AT1G14210	Ribonuclease T2 family protein
ath-u.5	RNS1	ribonuclease 1
ath-u.5	AT1G14220	Ribonuclease T2 family protein
bra-r.6	103875452	ribonuclease 1
bra-r.6	103829206	ribonuclease 3
bra-r.6	103836080	ribonuclease 3-like
bna-r.1	111203334	ribonuclease 1
bna-r.1	106369143	ribonuclease 3-like
cit-r.1	102615052	ribonuclease 3
cit-r.1	102615337	extracellular ribonuclease LE-like
gma-u.5	100782011	ribonuclease 1
gma-u.5	100778239	ribonuclease 3
vvi-u.5	100249919	extracellular ribonuclease LE
ppo-u.5	7460691	ribonuclease 3
mtr-u.5	11412791	ribonuclease 3
mtr-u.5	11417570	ribonuclease 1
sly-u.5	rnalx	intracellular ribonuclease LX
sly-u.5	RNALE	ribonuclease T2
sot-r.1	102592540	intracellular ribonuclease LX-like
sot-r.1	102600511	extracellular ribonuclease LE
nta-r.1	107759406	intracellular ribonuclease LX
nta-r.1	107775065	intracellular ribonuclease LX-like
nta-r.1	107822186	intracellular ribonuclease LX-like
osa-u.5	4347708	ribonuclease 3
zma-u.5	100284932	ribonuclease 1
zma-u.5	100192110	uncharacterized LOC100192110
tae-r.2	123187858	ribonuclease 1
tae-r.2	123185356	ribonuclease 3
tae-r.2	123134706	ribonuclease 1
hvu-r.1	123402190	ribonuclease 1-like
hvu-r.1	123421387	ribonuclease 3-like
sbi-r.1	8063515	ribonuclease 1
sbi-r.1	8063317	ribonuclease 3
sbi-r.1	8077825	ribonuclease 1
bdi-r.1	100833857	ribonuclease 1
bdi-r.1	100838612	ribonuclease 1
cre-r.1	CHLRE_06g306550v5	uncharacterized protein

Top 50 coexpressed genes to 107940648 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107940648 (ghi-r.1 coexpression data)

CoexMap"107940648"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006401 [list] [network] RNA catabolic process

(216 genes)

IEA

GO CC

GO:0005576 [list] [network] extracellular region

(689 genes)

IEA

GO MF

GO:0033897 [list] [network] ribonuclease T2 activity	(23 genes)	IEA
GO:0003723 [list] [network] RNA binding	(3053 genes)	IEA

Protein

XP_016729571.2 [sequence] [blastp]

Subcellular
localization
wolf

extr 7, chlo 1, plas 1, vacu 1, E.R. 1, E.R._vacu 1, E.R._plas 1

(predict for XP_016729571.2)

Subcellular
localization
TargetP

scret 9

(predict for XP_016729571.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107940648	ghi-r.1 for 107902274	ghi-r.1 for 107940649	ath-u.5 for AT1G14210	ath-u.5 for RNS1	ath-u.5 for AT1G14220	bra-r.6 for 103875452	bra-r.6 for 103829206	bra-r.6 for 103836080	bna-r.1 for 111203334	bna-r.1 for 106369143	cit-r.1 for 102615052	cit-r.1 for 102615337	gma-u.5 for 100782011	gma-u.5 for 100778239	vvi-u.5 for 100249919	ppo-u.5 for 7460691	mtr-u.5 for 11412791	mtr-u.5 for 11417570	sly-u.5 for rnalx	sly-u.5 for RNALE	sot-r.1 for 102592540	sot-r.1 for 102600511	nta-r.1 for 107759406	nta-r.1 for 107775065	nta-r.1 for 107822186	osa-u.5 for 4347708	zma-u.5 for 100284932	zma-u.5 for 100192110	tae-r.2 for 123187858	tae-r.2 for 123185356	tae-r.2 for 123134706	hvu-r.1 for 123402190	hvu-r.1 for 123421387	sbi-r.1 for 8063515	sbi-r.1 for 8063317	sbi-r.1 for 8077825	bdi-r.1 for 100833857	bdi-r.1 for 100838612	cre-r.1 for CHLRE_06g306550v5

Ortholog

Ortholog ID: 892

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

RNS3

RNALE

Function^*

ribonuclease 3

ribonuclease 1

ribonuclease 3

Ribonuclease T2 family protein

ribonuclease 3

ribonuclease 1

ribonuclease 3

ribonuclease 1

ribonuclease 1-like

ribonuclease 1

ribonuclease 3

extracellular ribonuclease LE-like

ribonuclease 1

putative ribonuclease T2

uncharacterized LOC100527255

extracellular ribonuclease LE

ribonuclease 3

ribonuclease 1

ribonuclease 3

ribonuclease 1

ribonuclease 3

ribonuclease T2

intracellular ribonuclease LX-like

extracellular ribonuclease LE

intracellular ribonuclease LX

extracellular ribonuclease LE-like

ribonuclease 3

extracellular ribonuclease LE

ribonuclease 1

uncharacterized LOC100192110

ribonuclease 3

ribonuclease 1

ribonuclease 3-like

ribonuclease 1-like

ribonuclease 1

ribonuclease 3

ribonuclease 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00740	Riboflavin metabolism	2
ghi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	4
ath04075	Plant hormone signal transduction	4
ath00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00073	Cutin, suberine and wax biosynthesis	2
bra00062	Fatty acid elongation	2
bra01212	Fatty acid metabolism	2
bra04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00620	Pyruvate metabolism	6
bna00640	Propanoate metabolism	6
bna01200	Carbon metabolism	6
bna00061	Fatty acid biosynthesis	4
bna01212	Fatty acid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00460	Cyanoamino acid metabolism	2
cit00500	Starch and sucrose metabolism	2
cit00999	Biosynthesis of various plant secondary metabolites	2
cit00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00740	Riboflavin metabolism	2
gma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00520	Amino sugar and nucleotide sugar metabolism	3
ppo04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00040	Pentose and glucuronate interconversions	2
mtr00940	Phenylpropanoid biosynthesis	2
mtr00562	Inositol phosphate metabolism	2
mtr00564	Glycerophospholipid metabolism	2
mtr00565	Ether lipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	3
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04626	Plant-pathogen interaction	3
sot04016	MAPK signaling pathway - plant	2
sot04075	Plant hormone signal transduction	2
sot04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00999	Biosynthesis of various plant secondary metabolites	3
nta00460	Cyanoamino acid metabolism	2
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	4
nta00566	Sulfoquinovose metabolism	4
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	4
nta00566	Sulfoquinovose metabolism	4
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00230	Purine metabolism	2
osa00240	Pyrimidine metabolism	2
osa01232	Nucleotide metabolism	2
osa00591	Linoleic acid metabolism	2
osa00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04626	Plant-pathogen interaction	2
hvu00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	6
sbi00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00906	Carotenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00562	Inositol phosphate metabolism	2
sbi00564	Glycerophospholipid metabolism	2
sbi00565	Ether lipid metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

107940648

107940649

107918619

837982

837983

839225

103875452

103842986

103853966

111203334

106415884

106352194

102615052

102615337

100782011

100306447

100527255

100249919

7460691

7460690

11412791

11422141

25494640

544098

102592540

102600511

107759406

107813432

107811341

4347708

4345656

100284932

100192110

123041280

123048962

123421387

123425196

8063515

8063317

8077825

100833857

100838612

5716875

The preparation time of this page was 0.1 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	3	3	2	2	2	1	1	2	2	2	3	1	2	3	2	3	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107940648 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107940648 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**