ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107941618	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2
ghi-r.1	107928423	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1
ghi-r.1	107929178	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1
ghi-r.1	107927794	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2
ath-u.5	ARD3	acireductone dioxygenase 3
ath-u.5	ATARD2	RmlC-like cupins superfamily protein
ath-u.5	ARD1	acireductone dioxygenase 1
bra-r.6	103848836	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4
bra-r.6	103839226	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4
bra-r.6	103871834	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2
bna-r.1	106455045	acireductone dioxygenase 4
bna-r.1	125577896	acireductone dioxygenase 4
bna-r.1	106409006	acireductone dioxygenase 4-like
cit-r.1	102625112	acireductone dioxygenase 2
cit-r.1	102624829	acireductone dioxygenase 1
gma-u.5	100812492	putative 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
gma-u.5	100500632	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4
gma-u.5	100500592	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase-like protein
vvi-u.5	100232920	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2-like
vvi-u.5	104879260	acireductone dioxygenase 1
ppo-u.5	7467506	acireductone dioxygenase 2
ppo-u.5	7473428	acireductone dioxygenase 1
mtr-u.5	25485141	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2
mtr-u.5	25485143	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1
sly-u.5	ARD	acireductone dioxygenase
sly-u.5	101255136	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1
sot-r.1	102599891	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1
sot-r.1	ARD	acireductone dioxygenase
nta-r.1	107828443	acireductone dioxygenase 2
nta-r.1	107815917	acireductone dioxygenase 1
nta-r.1	107794012	acireductone dioxygenase 2
zma-u.5	100216585	uncharacterized LOC100216585
zma-u.5	103643555	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4
tae-r.2	123190103	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4
tae-r.2	123144007	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4
tae-r.2	123130633	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4-like
hvu-r.1	123449326	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4-like
hvu-r.1	123449509	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2
sbi-r.1	110431801	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4-like
sbi-r.1	8059441	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1
sbi-r.1	8059853	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase homolog 2
bdi-r.1	100837759	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2
bdi-r.1	100828612	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4
cre-r.1	CHLRE_12g542850v5	uncharacterized protein

Top 50 coexpressed genes to 107941618 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107941618 (ghi-r.1 coexpression data)

CoexMap"107941618"

[Cytoscape]

Annotation

functional annotation

KEGG

ghi00270 [list] [network] Cysteine and methionine metabolism (291 genes)

GO BP

GO:0019509 [list] [network] L-methionine salvage from methylthioadenosine

(13 genes)

IEA

GO CC

GO MF

GO:0010309 [list] [network] acireductone dioxygenase [iron(II)-requiring] activity

(4 genes)

IEA

Protein

XP_016730676.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, pero 1, nucl 1, mito 1, extr 1

(predict for XP_016730676.1)

Subcellular
localization
TargetP

other 8

(predict for XP_016730676.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107941618	ghi-r.1 for 107928423	ghi-r.1 for 107929178	ghi-r.1 for 107927794	ath-u.5 for ARD3	ath-u.5 for ATARD2	ath-u.5 for ARD1	bra-r.6 for 103848836	bra-r.6 for 103839226	bra-r.6 for 103871834	bna-r.1 for 106455045	bna-r.1 for 125577896	bna-r.1 for 106409006	cit-r.1 for 102625112	cit-r.1 for 102624829	gma-u.5 for 100812492	gma-u.5 for 100500632	gma-u.5 for 100500592	vvi-u.5 for 100232920	vvi-u.5 for 104879260	ppo-u.5 for 7467506	ppo-u.5 for 7473428	mtr-u.5 for 25485141	mtr-u.5 for 25485143	sly-u.5 for ARD	sly-u.5 for 101255136	sot-r.1 for 102599891	sot-r.1 for ARD	nta-r.1 for 107828443	nta-r.1 for 107815917	nta-r.1 for 107794012	zma-u.5 for 100216585	zma-u.5 for 103643555	tae-r.2 for 123190103	tae-r.2 for 123144007	tae-r.2 for 123130633	hvu-r.1 for 123449326	hvu-r.1 for 123449509	sbi-r.1 for 110431801	sbi-r.1 for 8059441	sbi-r.1 for 8059853	bdi-r.1 for 100837759	bdi-r.1 for 100828612	cre-r.1 for CHLRE_12g542850v5

Ortholog

Ortholog ID: 2618

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

zma

tae

hvu

sbi

bdi

cre

Symbol

LOC107941618

LOC107928423

LOC107929178

ARD3

ATARD2

ARD4

ARD

ARD

Function^*

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1

acireductone dioxygenase 3

RmlC-like cupins superfamily protein

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2

acireductone dioxygenase 4

acireductone dioxygenase 4-like

acireductone dioxygenase 2

acireductone dioxygenase 1

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase-like protein

putative 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2-like

acireductone dioxygenase 1

acireductone dioxygenase 2

acireductone dioxygenase 1

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1

acireductone dioxygenase

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1

acireductone dioxygenase

acireductone dioxygenase 2

acireductone dioxygenase 1

uncharacterized LOC100216585

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4-like

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4-like

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4-like

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase homolog 2

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04146	Peroxisome	2
ghi00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04146	Peroxisome	2
ghi00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04146	Peroxisome	4
ath01200	Carbon metabolism	3
ath01230	Biosynthesis of amino acids	3
ath04145	Phagosome	2
ath04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2
bra04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00270	Cysteine and methionine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00270	Cysteine and methionine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00270	Cysteine and methionine metabolism	2
bna00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00270	Cysteine and methionine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2
gma00999	Biosynthesis of various plant secondary metabolites	2
gma00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	4
gma00520	Amino sugar and nucleotide sugar metabolism	4
gma01250	Biosynthesis of nucleotide sugars	4
gma00270	Cysteine and methionine metabolism	2
gma00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	2
gma00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04146	Peroxisome	2
vvi00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04136	Autophagy - other	4
ppo00965	Betalain biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	6
ppo00710	Carbon fixation by Calvin cycle	5
ppo00010	Glycolysis / Gluconeogenesis	2
ppo00030	Pentose phosphate pathway	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00190	Oxidative phosphorylation	4
mtr00270	Cysteine and methionine metabolism	3
mtr04136	Autophagy - other	2
mtr01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00270	Cysteine and methionine metabolism	5
sly00480	Glutathione metabolism	3
sly00330	Arginine and proline metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00480	Glutathione metabolism	4
sot00270	Cysteine and methionine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00270	Cysteine and methionine metabolism	6
nta03040	Spliceosome	2
nta00010	Glycolysis / Gluconeogenesis	2
nta00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00270	Cysteine and methionine metabolism	5
nta03040	Spliceosome	2
nta00010	Glycolysis / Gluconeogenesis	2
nta00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00906	Carotenoid biosynthesis	2
nta00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00190	Oxidative phosphorylation	5
zma00270	Cysteine and methionine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00195	Photosynthesis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03060	Protein export	2
tae04141	Protein processing in endoplasmic reticulum	2
tae04145	Phagosome	2
tae00270	Cysteine and methionine metabolism	2
tae00960	Tropane, piperidine and pyridine alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00270	Cysteine and methionine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00270	Cysteine and methionine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00270	Cysteine and methionine metabolism	3
hvu03050	Proteasome	2
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00270	Cysteine and methionine metabolism	5
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00480	Glutathione metabolism	5
sbi00053	Ascorbate and aldarate metabolism	3
sbi00270	Cysteine and methionine metabolism	2
sbi00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00270	Cysteine and methionine metabolism	3
bdi00230	Purine metabolism	2
bdi01232	Nucleotide metabolism	2
bdi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00270	Cysteine and methionine metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

107941618

107928423

107929178

817180

827122

834407

103848836

103839226

103871834

106455045

106409006

106372737

102625112

102624829

100500632

100500592

100306042

100232920

104879260

7467506

7473428

25485141

25485143

101255431

101255136

102599891

102577691

107828443

107794012

107794003

100216585

103643555

123130633

123066662

123130632

123449326

123449509

110431801

8059441

8059853

100837759

100828612

5719530

The preparation time of this page was 0.3 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	zma	tae	hvu	sbi	bdi	cre	osa
Paralog	4	3	3	3	2	3	2	2	2	2	2	3	2	3	2	3	2	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107941618 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107941618 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**