ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107945074	DDB1- and CUL4-associated factor 8
ghi-r.1	107949058	DDB1- and CUL4-associated factor 8
ghi-r.1	121203126	DDB1- and CUL4-associated factor 8
ghi-r.1	107949115	DDB1- and CUL4-associated factor 8
ath-u.5	AT3G45620	Transducin/WD40 repeat-like superfamily protein
ath-u.5	AT4G35140	Transducin/WD40 repeat-like superfamily protein
ath-u.5	AT4G38480	Transducin/WD40 repeat-like superfamily protein
bra-r.6	103831116	DDB1- and CUL4-associated factor 8-like protein 2
bna-r.1	106361548	DDB1- and CUL4-associated factor 8
bna-r.1	106375269	DDB1- and CUL4-associated factor 8-like protein 2
bna-r.1	106346495	DDB1- and CUL4-associated factor 8
cit-r.1	102628870	uncharacterized LOC102628870
cit-r.1	102612899	uncharacterized LOC102612899
gma-u.5	100797330	DDB1- and CUL4-associated factor 8
gma-u.5	100794236	DDB1- and CUL4-associated factor 8
gma-u.5	100791300	DDB1- and CUL4-associated factor 8
vvi-u.5	100251996	uncharacterized LOC100251996
vvi-u.5	100253665	uncharacterized LOC100253665
ppo-u.5	7474983	uncharacterized LOC7474983
ppo-u.5	7470422	uncharacterized LOC7470422
mtr-u.5	25485648	DDB1- and CUL4-associated factor 8
mtr-u.5	11408884	protein ALTERED SEED GERMINATION 2
sly-u.5	101251849	uncharacterized LOC101251849
sly-u.5	101247968	uncharacterized LOC101247968
sot-r.1	102597289	DDB1- and CUL4-associated factor 8
sot-r.1	102585248	DDB1- and CUL4-associated factor 8-like
sot-r.1	102603271	DDB1- and CUL4-associated factor 8-like
nta-r.1	107771848	uncharacterized LOC107771848
nta-r.1	107821858	uncharacterized LOC107821858
nta-r.1	107829197	uncharacterized LOC107829197
osa-u.5	4332480	uncharacterized LOC4332480
osa-u.5	4349273	uncharacterized LOC4349273
zma-u.5	103634486	DDB1- and CUL4-associated factor 8
zma-u.5	103637246	DDB1- and CUL4-associated factor 8
zma-u.5	100272942	nucleotide binding protein
tae-r.2	123078762	DDB1- and CUL4-associated factor 8
tae-r.2	123051391	DDB1- and CUL4-associated factor 8
tae-r.2	123085543	DDB1- and CUL4-associated factor 8
hvu-r.1	123437728	DDB1- and CUL4-associated factor 8-like
hvu-r.1	123410580	DDB1- and CUL4-associated factor 8-like
hvu-r.1	123448941	DDB1- and CUL4-associated factor 8
sbi-r.1	8084880	DDB1- and CUL4-associated factor 8
sbi-r.1	110431960	DDB1- and CUL4-associated factor 8-like
sbi-r.1	8069208	DDB1- and CUL4-associated factor 6
bdi-r.1	100845367	DDB1- and CUL4-associated factor 8
bdi-r.1	100829926	DDB1- and CUL4-associated factor 8
cre-r.1	CHLRE_07g328600v5	uncharacterized protein

Top 50 coexpressed genes to 107945074 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107945074 (ghi-r.1 coexpression data)

CoexMap"107945074"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex	(59 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(13864 genes)	IEA

GO MF

GO:0005515 [list] [network] protein binding

(10797 genes)

IEA

Protein

XP_016734408.1 [sequence] [blastp]
XP_016734409.1 [sequence] [blastp]
XP_016734410.1 [sequence] [blastp]
XP_016734411.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, E.R. 4, mito 1, plas 1, extr 1, vacu 1, mito_plas 1	(predict for XP_016734408.1)
chlo 4, E.R. 4, mito 1, plas 1, extr 1, vacu 1, mito_plas 1	(predict for XP_016734409.1)
cyto 6, nucl 2, mito 1, pero 1	(predict for XP_016734410.1)
cyto 6, nucl 2, mito 1, pero 1	(predict for XP_016734411.1)

Subcellular
localization
TargetP

other 9	(predict for XP_016734408.1)
other 9	(predict for XP_016734409.1)
other 6, mito 3	(predict for XP_016734410.1)
other 6, mito 3	(predict for XP_016734411.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107945074	ghi-r.1 for 107949058	ghi-r.1 for 121203126	ghi-r.1 for 107949115	ath-u.5 for AT3G45620	ath-u.5 for AT4G35140	ath-u.5 for AT4G38480	bra-r.6 for 103831116	bna-r.1 for 106361548	bna-r.1 for 106375269	bna-r.1 for 106346495	cit-r.1 for 102628870	cit-r.1 for 102612899	gma-u.5 for 100797330	gma-u.5 for 100794236	gma-u.5 for 100791300	vvi-u.5 for 100251996	vvi-u.5 for 100253665	ppo-u.5 for 7474983	ppo-u.5 for 7470422	mtr-u.5 for 25485648	mtr-u.5 for 11408884	sly-u.5 for 101251849	sly-u.5 for 101247968	sot-r.1 for 102597289	sot-r.1 for 102585248	sot-r.1 for 102603271	nta-r.1 for 107771848	nta-r.1 for 107821858	nta-r.1 for 107829197	osa-u.5 for 4332480	osa-u.5 for 4349273	zma-u.5 for 103634486	zma-u.5 for 103637246	zma-u.5 for 100272942	tae-r.2 for 123078762	tae-r.2 for 123051391	tae-r.2 for 123085543	hvu-r.1 for 123437728	hvu-r.1 for 123410580	hvu-r.1 for 123448941	sbi-r.1 for 8084880	sbi-r.1 for 110431960	sbi-r.1 for 8069208	bdi-r.1 for 100845367	bdi-r.1 for 100829926	cre-r.1 for CHLRE_07g328600v5

Ortholog

Ortholog ID: 1981

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

DDB1- and CUL4-associated factor 8

Transducin/WD40 repeat-like superfamily protein

DDB1- and CUL4-associated factor 8-like protein 2

DDB1- and CUL4-associated factor 8

DDB1- and CUL4-associated factor 8-like protein 2

DDB1- and CUL4-associated factor 6

uncharacterized LOC102628870

uncharacterized LOC102612899

DDB1- and CUL4-associated factor 8

uncharacterized LOC100251996

uncharacterized LOC100253665

uncharacterized LOC7474983

uncharacterized LOC7470422

DDB1- and CUL4-associated factor 8

protein ALTERED SEED GERMINATION 2

uncharacterized LOC101251849

uncharacterized LOC101247968

DDB1- and CUL4-associated factor 8

DDB1- and CUL4-associated factor 8-like

uncharacterized LOC107821858

uncharacterized LOC107796570

uncharacterized LOC107799567

uncharacterized LOC4332480

uncharacterized LOC4349273

DDB1- and CUL4-associated factor 8

nucleotide binding protein

uncharacterized LOC100284249

DDB1- and CUL4-associated factor 8

DDB1- and CUL4-associated factor 8-like

DDB1- and CUL4-associated factor 8

DDB1- and CUL4-associated factor 8-like

DDB1- and CUL4-associated factor 6

DDB1- and CUL4-associated factor 8

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00310	Lysine degradation	2
ghi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00520	Amino sugar and nucleotide sugar metabolism	3
ghi01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna02010	ABC transporters	2
bna00240	Pyrimidine metabolism	2
bna01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2
gma04626	Plant-pathogen interaction	2
gma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	2
gma04626	Plant-pathogen interaction	2
gma00511	Other glycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	7
gma04081	Hormone signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00562	Inositol phosphate metabolism	2
vvi04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	2
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	2
nta04141	Protein processing in endoplasmic reticulum	2
nta00740	Riboflavin metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04136	Autophagy - other	6
nta00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	2
nta04141	Protein processing in endoplasmic reticulum	2
nta00740	Riboflavin metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	6
tae04130	SNARE interactions in vesicular transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	4
bdi03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00620	Pyruvate metabolism	3
cre01200	Carbon metabolism	3
cre00710	Carbon fixation by Calvin cycle	2

Expression

Expression pattern

Entrez Gene ID^*

107949058

107949115

107947351

823704

829666

830004

103831116

106361548

106375269

106389922

102628870

102612899

100794236

100791300

100776572

100251996

100253665

7474983

7470422

25485648

11408884

101251849

101247968

102597289

102585248

102603271

107821858

107796570

107799567

4332480

4349273

103634486

100272942

100284249

123092494

123127326

123164507

123437728

123410580

123448941

8084880

110431960

8069208

100845367

100829926

5716213

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Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	1	3	2	3	2	2	2	2	3	3	2	3	3	3	3	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107945074 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107945074 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**