ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107945544	CCR4-NOT transcription complex subunit 1
ghi-r.1	107924016	CCR4-NOT transcription complex subunit 1
ghi-r.1	107911887	CCR4-NOT transcription complex subunit 1
ath-u.5	AT1G02080	transcription regulator
bra-r.6	103850259	CCR4-NOT transcription complex subunit 1
bra-r.6	103844691	CCR4-NOT transcription complex subunit 1
bra-r.6	103843826	CCR4-NOT transcription complex subunit 1
bna-r.1	106434149	CCR4-NOT transcription complex subunit 1
bna-r.1	111207780	CCR4-NOT transcription complex subunit 1-like
bna-r.1	111203605	CCR4-NOT transcription complex subunit 1
cit-r.1	102630812	uncharacterized LOC102630812
gma-u.5	100803794	CCR4-NOT transcription complex subunit 1
gma-u.5	100783935	CCR4-NOT transcription complex subunit 1
vvi-u.5	100261590	uncharacterized LOC100261590
vvi-u.5	100256945	uncharacterized LOC100256945
ppo-u.5	18105172	uncharacterized LOC18105172
ppo-u.5	7483819	uncharacterized LOC7483819
mtr-u.5	11429926	CCR4-NOT transcription complex subunit 1
sly-u.5	101267935	uncharacterized LOC101267935
sot-r.1	102583960	CCR4-NOT transcription complex subunit 1
nta-r.1	107802598	uncharacterized LOC107802598
nta-r.1	107804987	uncharacterized LOC107804987
osa-u.5	4331296	uncharacterized LOC4331296
osa-u.5	9272729	uncharacterized LOC9272729
zma-u.5	100502409	uncharacterized LOC100502409
zma-u.5	100383837	uncharacterized LOC100383837
tae-r.2	123106092	CCR4-NOT transcription complex subunit 1
tae-r.2	123127893	CCR4-NOT transcription complex subunit 1
tae-r.2	123093957	CCR4-NOT transcription complex subunit 1
hvu-r.1	123438675	CCR4-NOT transcription complex subunit 1-like
hvu-r.1	123449980	CCR4-NOT transcription complex subunit 1-like
sbi-r.1	8081555	CCR4-NOT transcription complex subunit 1
sbi-r.1	8058085	CCR4-NOT transcription complex subunit 1
bdi-r.1	100840701	CCR4-NOT transcription complex subunit 1
bdi-r.1	100843991	CCR4-NOT transcription complex subunit 1
cre-r.1	CHLRE_14g632950v5	uncharacterized protein

Top 50 coexpressed genes to 107945544 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107945544 (ghi-r.1 coexpression data)

CoexMap"107945544"

[Cytoscape]

Annotation

functional annotation

KEGG

ghi03018 [list] [network] RNA degradation (286 genes)

GO BP

GO:0000288 [list] [network] nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	(47 genes)	IEA
GO:0017148 [list] [network] negative regulation of translation	(69 genes)	IEA

GO CC

GO:0030015 [list] [network] CCR4-NOT core complex	(56 genes)	IEA
GO:0000932 [list] [network] P-body	(130 genes)	IEA

GO MF

GO:0060090 [list] [network] molecular adaptor activity

(517 genes)

IEA

Protein

XP_016735087.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 4, cyto 1, vacu 1, golg 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1

(predict for XP_016735087.2)

Subcellular
localization
TargetP

scret 4, other 3

(predict for XP_016735087.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107945544	ghi-r.1 for 107924016	ghi-r.1 for 107911887	ath-u.5 for AT1G02080	bra-r.6 for 103850259	bra-r.6 for 103844691	bra-r.6 for 103843826	bna-r.1 for 106434149	bna-r.1 for 111207780	bna-r.1 for 111203605	cit-r.1 for 102630812	gma-u.5 for 100803794	gma-u.5 for 100783935	vvi-u.5 for 100261590	vvi-u.5 for 100256945	ppo-u.5 for 18105172	ppo-u.5 for 7483819	mtr-u.5 for 11429926	sly-u.5 for 101267935	sot-r.1 for 102583960	nta-r.1 for 107802598	nta-r.1 for 107804987	osa-u.5 for 4331296	osa-u.5 for 9272729	zma-u.5 for 100502409	zma-u.5 for 100383837	tae-r.2 for 123106092	tae-r.2 for 123127893	tae-r.2 for 123093957	hvu-r.1 for 123438675	hvu-r.1 for 123449980	sbi-r.1 for 8081555	sbi-r.1 for 8058085	bdi-r.1 for 100840701	bdi-r.1 for 100843991	cre-r.1 for CHLRE_14g632950v5

Ortholog

Ortholog ID: 4643

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

CCR4-NOT transcription complex subunit 1

transcription regulator

CCR4-NOT transcription complex subunit 1

CCR4-NOT transcription complex subunit 1-like

CCR4-NOT transcription complex subunit 1

CCR4-NOT transcription complex subunit 1-like

uncharacterized LOC102630812

CCR4-NOT transcription complex subunit 1

uncharacterized LOC100261590

uncharacterized LOC100256945

uncharacterized LOC18105172

uncharacterized LOC7483819

CCR4-NOT transcription complex subunit 1

uncharacterized LOC101267935

CCR4-NOT transcription complex subunit 1

uncharacterized LOC107802598

uncharacterized LOC107804987

uncharacterized LOC4331296

uncharacterized LOC9272729

uncharacterized LOC100502409

uncharacterized LOC100383837

CCR4-NOT transcription complex subunit 1

CCR4-NOT transcription complex subunit 1-like

CCR4-NOT transcription complex subunit 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04136	Autophagy - other	3
ghi04518	Integrin signaling	3
ghi03082	ATP-dependent chromatin remodeling	3
ghi03018	RNA degradation	3
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04136	Autophagy - other	3
ghi04518	Integrin signaling	3
ghi03082	ATP-dependent chromatin remodeling	3
ghi03018	RNA degradation	3
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi03018	RNA degradation	3
ghi04136	Autophagy - other	2
ghi04518	Integrin signaling	2
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	3
bra04120	Ubiquitin mediated proteolysis	2
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	3
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	6
bna03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	6
bna03082	ATP-dependent chromatin remodeling	2
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	6
bna03082	ATP-dependent chromatin remodeling	2
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03018	RNA degradation	2
cit03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	2
gma03082	ATP-dependent chromatin remodeling	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	3
gma03082	ATP-dependent chromatin remodeling	3
gma03015	mRNA surveillance pathway	2
gma04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2
ppo03018	RNA degradation	2
ppo04136	Autophagy - other	2
ppo04518	Integrin signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	2
ppo04136	Autophagy - other	2
ppo04518	Integrin signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	6
mtr03420	Nucleotide excision repair	2
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	3
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	3
nta03430	Mismatch repair	2
nta03015	mRNA surveillance pathway	2
nta03082	ATP-dependent chromatin remodeling	2
nta03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	3
nta03015	mRNA surveillance pathway	2
nta03460	Fanconi anemia pathway	2
nta03013	Nucleocytoplasmic transport	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	4
zma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	5
tae04148	Efferocytosis	4
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	6
tae03083	Polycomb repressive complex	3
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	3
sbi03018	RNA degradation	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	3
bdi04120	Ubiquitin mediated proteolysis	3
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	4
bdi04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	6
cre03018	RNA degradation	2

Expression

Expression pattern

Entrez Gene ID^*

107945544

107924016

107911887

839244

103850259

103844691

103843826

111207780

111203605

106370831

102630812

100803794

100783935

100261590

100256945

18105172

7483819

11429926

101267935

102583960

107802598

107804987

4331296

9272729

100502409

100383837

123106092

123127893

123181624

123438675

123449980

8081555

8058085

100840701

100843991

5718333

The preparation time of this page was 0.1 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	1	3	3	1	2	2	2	1	1	1	2	2	2	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107945544 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107945544 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**