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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107948338   pentatricopeptide repeat-containing protein At5g02830, chloroplastic 
 ath-u.5   AT5G02830   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100805564   pentatricopeptide repeat-containing protein At5g02830, chloroplastic 
 gma-u.5   100794606   pentatricopeptide repeat-containing protein At5g02830, chloroplastic 
 vvi-u.5   100260184   pentatricopeptide repeat-containing protein At5g02830, chloroplastic 
 ppo-u.5   18100244   pentatricopeptide repeat-containing protein At5g02830, chloroplastic 
 mtr-u.5   11430650   pentatricopeptide repeat-containing protein At5g02830, chloroplastic 
 sly-u.5   101261059   pentatricopeptide repeat-containing protein At5g02830, chloroplastic 
 osa-u.5   4332471   pentatricopeptide repeat-containing protein At5g02830, chloroplastic 
 zma-u.5   103639281   pentatricopeptide repeat-containing protein, chloroplastic-like 

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Top 50 coexpressed genes to 107948338 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107948338 (ghi-r.1 coexpression data)

CoexMap"107948338"


ghiLOC107948338 | Entrez gene ID : 107948338    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016738331.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  chlo_mito 5  (predict for XP_016738331.2)
Subcellular
localization
TargetP
chlo 9  (predict for XP_016738331.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107948338
ath-u.5
for
AT5G02830
gma-u.5
for
100805564
gma-u.5
for
100794606
vvi-u.5
for
100260184
ppo-u.5
for
18100244
mtr-u.5
for
11430650
sly-u.5
for
101261059
osa-u.5
for
4332471
zma-u.5
for
103639281


Ortholog ID: 10308
Species ghi ghi ath bra bna bna cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC107948338 LOC107897996 AT5G02830 LOC103847423 LOC106450518 LOC125579111 LOC102617778 LOC100805564 LOC100794606 LOC100260184 LOC18100244 LOC11430650 LOC101261059 LOC102578424 LOC107786354 LOC107791524 LOC4332471 LOC103639281 LOC123092504 LOC123097818 LOC123448949 LOC8081449 LOC100838824
Function* pentatricopeptide repeat-containing protein At5g02830, chloroplastic pentatricopeptide repeat-containing protein At5g02830, chloroplastic Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At5g02830, chloroplastic pentatricopeptide repeat-containing protein At5g02830, chloroplastic-like pentatricopeptide repeat-containing protein At5g02830, chloroplastic-like pentatricopeptide repeat-containing protein At5g02830, chloroplastic pentatricopeptide repeat-containing protein At5g02830, chloroplastic pentatricopeptide repeat-containing protein At5g02830, chloroplastic pentatricopeptide repeat-containing protein At5g02830, chloroplastic pentatricopeptide repeat-containing protein At5g02830, chloroplastic pentatricopeptide repeat-containing protein At5g02830, chloroplastic pentatricopeptide repeat-containing protein At5g02830, chloroplastic pentatricopeptide repeat-containing protein At5g02830, chloroplastic pentatricopeptide repeat-containing protein At5g02830, chloroplastic pentatricopeptide repeat-containing protein At5g02830, chloroplastic pentatricopeptide repeat-containing protein At5g02830, chloroplastic pentatricopeptide repeat-containing protein, chloroplastic-like pentatricopeptide repeat-containing protein At5g02830, chloroplastic pentatricopeptide repeat-containing protein At5g02830, chloroplastic pentatricopeptide repeat-containing protein At5g02830, chloroplastic pentatricopeptide repeat-containing protein At5g02830, chloroplastic pentatricopeptide repeat-containing protein At5g02830, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 3
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 6
ppo00710 Carbon fixation by Calvin cycle 4
ppo01230 Biosynthesis of amino acids 3
ppo00630 Glyoxylate and dicarboxylate metabolism 3
ppo00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00730 Thiamine metabolism 2
hvu01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107948338 107897996 831772 103847423 106450518 125579111 102617778 100805564 100794606 100260184 18100244 11430650 101261059 102578424 107786354 107791524 4332471 103639281 123092504 123097818 123448949 8081449 100838824
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