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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107954373   flowering time control protein FCA 
 ghi-r.1   107910002   flowering time control protein FCA 
 ath-u.5   AT2G47310   flowering time control protein-related / FCA gamma-like protein 
 bra-r.6   103858241   flowering time control protein FCA 
 bra-r.6   117132517   flowering time control protein FCA-like 
 bna-r.1   106438323   flowering time control protein FCA 
 bna-r.1   106437063   flowering time control protein FCA 
 cit-r.1   102612542   flowering time control protein FCA 
 gma-u.5   100776162   flowering time control protein FCA 
 gma-u.5   100795107   flowering time control protein FCA 
 vvi-u.5   100262417   flowering time control protein FCA 
 ppo-u.5   7481415   flowering time control protein FCA 
 mtr-u.5   11426626   flowering time control protein FCA 
 sly-u.5   101263627   flowering time control protein FCA 
 sot-r.1   102600961   flowering time control protein FCA 
 nta-r.1   107797420   uncharacterized LOC107797420 
 nta-r.1   107815931   uncharacterized LOC107815931 

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Top 50 coexpressed genes to 107954373 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107954373 (ghi-r.1 coexpression data)

CoexMap"107954373"


ghiLOC107954373 | Entrez gene ID : 107954373    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta bdi osa tae zma cre sbi hvu
Paralog 2 1 2 2 1 2 1 1 1 1 1 2 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0048026 [list] [network] positive regulation of mRNA splicing, via spliceosome  (14 genes)  IEA  
GO CC
GO:0005681 [list] [network] spliceosomal complex  (305 genes)  IEA  
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (890 genes)  IEA  
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016745399.1 [sequence] [blastp]
XP_016745400.1 [sequence] [blastp]
XP_016745401.1 [sequence] [blastp]
XP_016745402.1 [sequence] [blastp]
XP_016745403.1 [sequence] [blastp]
XP_016745404.1 [sequence] [blastp]
XP_016745405.1 [sequence] [blastp]
XP_040952590.1 [sequence] [blastp]
XP_040952591.1 [sequence] [blastp]
XP_040952592.1 [sequence] [blastp]
XP_040952593.1 [sequence] [blastp]
XP_040952595.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_016745399.1)
nucl 10  (predict for XP_016745400.1)
nucl 10  (predict for XP_016745401.1)
nucl 10  (predict for XP_016745402.1)
nucl 10  (predict for XP_016745403.1)
nucl 10  (predict for XP_016745404.1)
chlo 7,  chlo_mito 5,  mito 1  (predict for XP_016745405.1)
nucl 10  (predict for XP_040952590.1)
nucl 10  (predict for XP_040952591.1)
nucl 10  (predict for XP_040952592.1)
chlo 8,  chlo_mito 5,  mito 1  (predict for XP_040952593.1)
chlo 8,  chlo_mito 5,  mito 1  (predict for XP_040952595.1)
Subcellular
localization
TargetP
other 8,  mito 5  (predict for XP_016745399.1)
other 8,  mito 5  (predict for XP_016745400.1)
other 8,  mito 5  (predict for XP_016745401.1)
other 8,  mito 5  (predict for XP_016745402.1)
other 8,  mito 5  (predict for XP_016745403.1)
other 8,  mito 5  (predict for XP_016745404.1)
other 5,  chlo 5  (predict for XP_016745405.1)
other 8,  mito 5  (predict for XP_040952590.1)
other 8,  mito 5  (predict for XP_040952591.1)
other 8,  mito 5  (predict for XP_040952592.1)
other 5,  chlo 5  (predict for XP_040952593.1)
other 5,  chlo 5  (predict for XP_040952595.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107954373
ghi-r.1
for
107910002
ath-u.5
for
AT2G47310
bra-r.6
for
103858241
bra-r.6
for
117132517
bna-r.1
for
106438323
bna-r.1
for
106437063
cit-r.1
for
102612542
gma-u.5
for
100776162
gma-u.5
for
100795107
vvi-u.5
for
100262417
ppo-u.5
for
7481415
mtr-u.5
for
11426626
sly-u.5
for
101263627
sot-r.1
for
102600961
nta-r.1
for
107797420
nta-r.1
for
107815931


Ortholog ID: 12892
Species ghi ghi ath bra bra bna bna cit gma gma vvi ppo mtr sly sot nta nta
Symbol LOC107954373 LOC107910002 AT2G47310 LOC103858241 LOC117132517 LOC106438323 LOC106437063 LOC102612542 LOC100776162 LOC100795107 LOC100262417 LOC7481415 LOC11426626 LOC101263627 LOC102600961 LOC107797420 LOC107815931
Function* flowering time control protein FCA flowering time control protein FCA flowering time control protein-related / FCA gamma-like protein flowering time control protein FCA flowering time control protein FCA-like flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA uncharacterized LOC107797420 uncharacterized LOC107815931
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 3
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
vvi03013 Nucleocytoplasmic transport 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 2
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 2
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107954373 107910002 819344 103858241 117132517 106438323 106437063 102612542 100776162 100795107 100262417 7481415 11426626 101263627 102600961 107797420 107815931
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