ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	SCN1	Immunoglobulin E-set superfamily protein
gma-u.5	100813326	rho GDP-dissociation inhibitor 1
gma-u.5	100806852	rho GDP-dissociation inhibitor 1
gma-u.5	100780525	rho GDP-dissociation inhibitor 1
vvi-u.5	100260088	rho GDP-dissociation inhibitor 1
vvi-u.5	100262024	rho GDP-dissociation inhibitor 1
vvi-u.5	100244819	rho GDP-dissociation inhibitor 1
ppo-u.5	7463670	rho GDP-dissociation inhibitor 1
mtr-u.5	11439048	rho GDP-dissociation inhibitor 1
mtr-u.5	11438952	rho GDP-dissociation inhibitor 1
sly-u.5	101261404	rho GDP-dissociation inhibitor 1
sly-u.5	101249460	rho GDP-dissociation inhibitor 1
sly-u.5	101256241	rho GDP-dissociation inhibitor 1
osa-u.5	4330540	rho GDP-dissociation inhibitor 1
osa-u.5	4340881	rho GDP-dissociation inhibitor 1
zma-u.5	100191557	uncharacterized LOC100191557
zma-u.5	103654010	rho GDP-dissociation inhibitor 1
zma-u.5	100283410	rho GDP-dissociation inhibitor 1

Annotation

functional annotation

KEGG

GO BP

GO:0007266 [list] [network] Rho protein signal transduction

(15 genes)

IEA

GO CC

GO:0005829 [list] [network] cytosol	(2580 genes)	IEA
GO:0016020 [list] [network] membrane	(8195 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(13864 genes)	IEA

GO MF

GO:0005094 [list] [network] Rho GDP-dissociation inhibitor activity	(15 genes)	IEA
GO:0005515 [list] [network] protein binding	(10797 genes)	IEA

Protein

XP_016747707.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, nucl_plas 3, cyto 1, mito 1, chlo 1, extr 1, cyto_mito 1, cyto_pero 1, cyto_E.R. 1

(predict for XP_016747707.2)

Subcellular
localization
TargetP

other 9

(predict for XP_016747707.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for SCN1	gma-u.5 for 100813326	gma-u.5 for 100806852	gma-u.5 for 100780525	vvi-u.5 for 100260088	vvi-u.5 for 100262024	vvi-u.5 for 100244819	ppo-u.5 for 7463670	mtr-u.5 for 11439048	mtr-u.5 for 11438952	sly-u.5 for 101261404	sly-u.5 for 101249460	sly-u.5 for 101256241	osa-u.5 for 4330540	osa-u.5 for 4340881	zma-u.5 for 100191557	zma-u.5 for 103654010	zma-u.5 for 100283410

Ortholog

Ortholog ID: 1015

Species

ghi

ath

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

sbi

bdi

Symbol

SCN1

Function^*

rho GDP-dissociation inhibitor 1

Immunoglobulin E-set superfamily protein

rho GDP-dissociation inhibitor 1

rho GDP-dissociation inhibitor 1-like

rho GDP-dissociation inhibitor 1

uncharacterized LOC100191557

rho GDP-dissociation inhibitor 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04814	Motor proteins	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	2
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00240	Pyrimidine metabolism	3
gma01240	Biosynthesis of cofactors	3
gma00250	Alanine, aspartate and glutamate metabolism	2
gma04075	Plant hormone signal transduction	2
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00480	Glutathione metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00500	Starch and sucrose metabolism	3
sly01200	Carbon metabolism	3
sly00010	Glycolysis / Gluconeogenesis	2
sly00051	Fructose and mannose metabolism	2
sly00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00520	Amino sugar and nucleotide sugar metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01240	Biosynthesis of cofactors	4
sot00860	Porphyrin metabolism	3
sot00061	Fatty acid biosynthesis	2
sot01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	2
nta04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	2
nta04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04814	Motor proteins	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	3
sbi03040	Spliceosome	2
sbi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	4

Expression

Expression pattern

Entrez Gene ID^*

107927335

819979

102620968

102627893

100813326

100812303

100244819

100262024

7488584

7455832

11438952

101256241

101261404

102592782

102585476

107768328

107792507

4330540

4340881

100283410

100191557

123080242

123071927

8066576

8071775

100845405

100834696

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to SCN1 (ath-u.5 coexpression data)

Top 50 enrichment test to SCN1 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	1	3	3	1	2	3	2	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to SCN1 (ath-u.5 coexpression data)

Top 50 enrichment test to SCN1 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**