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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107958484   tyrosine--tRNA ligase 1, cytoplasmic 
 ath-u.5   AT2G33840   Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial 
 ath-u.5   AT1G28350   Nucleotidylyl transferase superfamily protein 
 gma-u.5   100806939   tyrosine--tRNA ligase 1, cytoplasmic 
 gma-u.5   100812345   putative tyrosine--tRNA ligase 1 
 vvi-u.5   100251282   tyrosine--tRNA ligase 1, cytoplasmic 
 ppo-u.5   7491576   tyrosine--tRNA ligase 1, cytoplasmic 
 mtr-u.5   25483460   tyrosine--tRNA ligase 1, cytoplasmic 
 mtr-u.5   11434175   tyrosine--tRNA ligase 2, cytoplasmic 
 sly-u.5   101247470   tyrosine--tRNA ligase 1, cytoplasmic 
 osa-u.5   4344663   tyrosine--tRNA ligase 1, cytoplasmic 
 osa-u.5   9269094   tyrosine--tRNA ligase 1, cytoplasmic 
 zma-u.5   100282839   Tyrosyl-tRNA synthetase 
 zma-u.5   100282315   tyrosyl-tRNA synthetase 

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Top 50 coexpressed genes to 107958484 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107958484 (ghi-r.1 coexpression data)

CoexMap"107958484"


ghiLOC107958484 | Entrez gene ID : 107958484    
Species ghi ath gma vvi ppo mtr sly osa zma hvu bna cit bra sbi bdi nta tae cre sot
Paralog 1 2 2 1 1 2 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00970 [list] [network] Aminoacyl-tRNA biosynthesis (172 genes)
GO BP
GO:0006437 [list] [network] tyrosyl-tRNA aminoacylation  (7 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0004831 [list] [network] tyrosine-tRNA ligase activity  (7 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (5155 genes)  IEA  
Protein XP_016749757.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto_nucl 4,  cyto 3,  chlo 2  (predict for XP_016749757.1)
Subcellular
localization
TargetP
chlo 8,  other 3  (predict for XP_016749757.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107958484
ath-u.5
for
AT2G33840
ath-u.5
for
AT1G28350
gma-u.5
for
100806939
gma-u.5
for
100812345
vvi-u.5
for
100251282
ppo-u.5
for
7491576
mtr-u.5
for
25483460
mtr-u.5
for
11434175
sly-u.5
for
101247470
osa-u.5
for
4344663
osa-u.5
for
9269094
zma-u.5
for
100282839
zma-u.5
for
100282315


Ortholog ID: 4051
Species ghi ghi ath ath bra bra bna bna cit gma gma vvi ppo mtr mtr sly sot nta nta osa zma zma hvu sbi sbi bdi cre
Symbol LOC107906367 LOC107947862 AT2G33840 AT1G28350 LOC103829015 LOC103835333 LOC106358059 LOC106396472 LOC102629233 LOC100806939 LOC100812345 LOC100251282 LOC7491576 LOC11434175 LOC25483460 LOC101247470 LOC102595197 LOC107829772 LOC107767155 LOC4344663 LOC100282315 LOC100282839 LOC123407602 LOC110437380 LOC8073415 LOC100822969 CHLRE_03g145727v5
Function* tyrosine--tRNA ligase 1, cytoplasmic tyrosine--tRNA ligase 1, cytoplasmic Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial Nucleotidylyl transferase superfamily protein tyrosine--tRNA ligase 2, cytoplasmic tyrosine--tRNA ligase 2, cytoplasmic tyrosine--tRNA ligase 2, cytoplasmic tyrosine--tRNA ligase 2, cytoplasmic-like tyrosine--tRNA ligase 1, cytoplasmic tyrosine--tRNA ligase 1, cytoplasmic putative tyrosine--tRNA ligase 1 tyrosine--tRNA ligase 1, cytoplasmic tyrosine--tRNA ligase 1, cytoplasmic tyrosine--tRNA ligase 2, cytoplasmic tyrosine--tRNA ligase 1, cytoplasmic tyrosine--tRNA ligase 1, cytoplasmic tyrosine--tRNA ligase 1, cytoplasmic tyrosine--tRNA ligase 1, cytoplasmic-like tyrosine--tRNA ligase 1, cytoplasmic-like tyrosine--tRNA ligase 1, cytoplasmic tyrosyl-tRNA synthetase Tyrosyl-tRNA synthetase tyrosine--tRNA ligase 1, cytoplasmic-like tyrosine--tRNA ligase 1, cytoplasmic tyrosine--tRNA ligase 1, cytoplasmic tyrosine--tRNA ligase 1, cytoplasmic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 5
ghi00270 Cysteine and methionine metabolism 2
ghi00670 One carbon pool by folate 2
ghi04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 8
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 6
bra03010 Ribosome 3
bra03018 RNA degradation 3
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 6
cit03010 Ribosome 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 12
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 7
gma00970 Aminoacyl-tRNA biosynthesis 3
gma00010 Glycolysis / Gluconeogenesis 2
gma01200 Carbon metabolism 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
ppo03008 Ribosome biogenesis in eukaryotes 2
ppo03010 Ribosome 2
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta00541 Biosynthesis of various nucleotide sugars 2
nta01250 Biosynthesis of nucleotide sugars 2
nta00760 Nicotinate and nicotinamide metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta00760 Nicotinate and nicotinamide metabolism 2
nta01240 Biosynthesis of cofactors 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 7
osa03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
zma00970 Aminoacyl-tRNA biosynthesis 3
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 6
hvu01230 Biosynthesis of amino acids 4
hvu00220 Arginine biosynthesis 3
hvu00250 Alanine, aspartate and glutamate metabolism 3
hvu03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 8
bdi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107906367 107947862 817952 839731 103829015 103835333 106358059 106396472 102629233 100806939 100812345 100251282 7491576 11434175 25483460 101247470 102595197 107829772 107767155 4344663 100282315 100282839 123407602 110437380 8073415 100822969 5721249
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