ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107958704	TBC domain-containing protein C1952.17c
ghi-r.1	107936080	TBC1 domain family member 13
ghi-r.1	107934488	TBC1 domain family member 13
ghi-r.1	107907335	TBC1 domain family member 13
ath-u.5	AT4G13730	Ypt/Rab-GAP domain of gyp1p superfamily protein
ath-u.5	AT1G04830	Ypt/Rab-GAP domain of gyp1p superfamily protein
bra-r.6	103836552	TBC domain-containing protein C1952.17c
bna-r.1	106426937	TBC1 domain family member 13-like
bna-r.1	111199884	TBC domain-containing protein C1952.17c-like
bna-r.1	106424218	TBC domain-containing protein C1952.17c-like
cit-r.1	102618010	uncharacterized LOC102618010
cit-r.1	102629850	uncharacterized LOC102629850
gma-u.5	100778830	TBC domain-containing protein C1952.17c
gma-u.5	100780720	TBC1 domain family member 13
gma-u.5	100784538	TBC domain-containing protein C1952.17c
vvi-u.5	100241872	uncharacterized LOC100241872
vvi-u.5	100264542	uncharacterized LOC100264542
ppo-u.5	7485477	uncharacterized LOC7485477
ppo-u.5	18107075	uncharacterized LOC18107075
ppo-u.5	7470101	TBC domain-containing protein C1952.17c
mtr-u.5	11436303	TBC1 domain family member 13
mtr-u.5	11415850	TBC1 domain family member 13
sly-u.5	101258656	uncharacterized LOC101258656
sly-u.5	101267352	uncharacterized LOC101267352
sot-r.1	102583943	TBC1 domain family member 13-like
sot-r.1	102584225	TBC1 domain family member 13
nta-r.1	107801189	uncharacterized LOC107801189
osa-u.5	4324984	uncharacterized LOC4324984
osa-u.5	4335615	uncharacterized LOC4335615
zma-u.5	100217192	uncharacterized LOC100217192
zma-u.5	100272273	uncharacterized LOC100272273
tae-r.2	123053113	TBC domain-containing protein C1952.17c
tae-r.2	123045276	TBC domain-containing protein C1952.17c
tae-r.2	123058978	TBC1 domain family member 13
hvu-r.1	123445145	TBC1 domain family member 13-like
hvu-r.1	123426499	TBC domain-containing protein C1952.17c-like
sbi-r.1	8078703	TBC1 domain family member 13
sbi-r.1	8070950	TBC1 domain family member 13
bdi-r.1	100827535	TBC1 domain family member 13
bdi-r.1	100827359	TBC1 domain family member 13
cre-r.1	CHLRE_03g195700v5	uncharacterized protein

Top 50 coexpressed genes to 107958704 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107958704 (ghi-r.1 coexpression data)

CoexMap"107958704"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0090630 [list] [network] activation of GTPase activity

(45 genes)

IEA

GO CC

GO MF

GO:0005096 [list] [network] GTPase activator activity

(177 genes)

IEA

Protein

XP_016750030.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 2, mito 1, pero 1, cysk 1

(predict for XP_016750030.1)

Subcellular
localization
TargetP

other 8, mito 3

(predict for XP_016750030.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107958704	ghi-r.1 for 107936080	ghi-r.1 for 107934488	ghi-r.1 for 107907335	ath-u.5 for AT4G13730	ath-u.5 for AT1G04830	bra-r.6 for 103836552	bna-r.1 for 106426937	bna-r.1 for 111199884	bna-r.1 for 106424218	cit-r.1 for 102618010	cit-r.1 for 102629850	gma-u.5 for 100778830	gma-u.5 for 100780720	gma-u.5 for 100784538	vvi-u.5 for 100241872	vvi-u.5 for 100264542	ppo-u.5 for 7485477	ppo-u.5 for 18107075	ppo-u.5 for 7470101	mtr-u.5 for 11436303	mtr-u.5 for 11415850	sly-u.5 for 101258656	sly-u.5 for 101267352	sot-r.1 for 102583943	sot-r.1 for 102584225	nta-r.1 for 107801189	osa-u.5 for 4324984	osa-u.5 for 4335615	zma-u.5 for 100217192	zma-u.5 for 100272273	tae-r.2 for 123053113	tae-r.2 for 123045276	tae-r.2 for 123058978	hvu-r.1 for 123445145	hvu-r.1 for 123426499	sbi-r.1 for 8078703	sbi-r.1 for 8070950	bdi-r.1 for 100827535	bdi-r.1 for 100827359	cre-r.1 for CHLRE_03g195700v5

Ortholog

Ortholog ID: 2830

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

TBC1 domain family member 13

Ypt/Rab-GAP domain of gyp1p superfamily protein

TBC domain-containing protein C1952.17c

TBC1 domain family member 13-like

TBC domain-containing protein C1952.17c-like

uncharacterized LOC102618010

uncharacterized LOC102629850

TBC domain-containing protein C1952.17c

TBC1 domain family member 13

uncharacterized LOC100241872

uncharacterized LOC100264542

uncharacterized LOC7485477

TBC domain-containing protein C1952.17c

TBC1 domain family member 13

uncharacterized LOC101258656

uncharacterized LOC101267352

TBC1 domain family member 13-like

TBC1 domain family member 13

uncharacterized LOC107801189

uncharacterized LOC107786337

uncharacterized LOC4324984

uncharacterized LOC4335615

uncharacterized LOC100217192

uncharacterized LOC100272273

TBC1 domain family member 13

TBC domain-containing protein C1952.17c

TBC1 domain family member 13-like

TBC domain-containing protein C1952.17c-like

TBC1 domain family member 13

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	5
ghi00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	5
ghi00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	7
ghi04145	Phagosome	7
ghi04148	Efferocytosis	7
ghi04142	Lysosome	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	9
ath00510	N-Glycan biosynthesis	5
ath00513	Various types of N-glycan biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00562	Inositol phosphate metabolism	2
ath04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03250	Viral life cycle - HIV-1	2
bra04120	Ubiquitin mediated proteolysis	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00620	Pyruvate metabolism	6
bna00900	Terpenoid backbone biosynthesis	4
bna04120	Ubiquitin mediated proteolysis	2
bna03020	RNA polymerase	2
bna03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00941	Flavonoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00941	Flavonoid biosynthesis	5
gma04144	Endocytosis	2
gma04145	Phagosome	2
gma04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00240	Pyrimidine metabolism	2
gma01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	7
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	2
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	5
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	5
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	6
tae04144	Endocytosis	3
tae04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	3
sbi04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	3

Expression

Expression pattern

Entrez Gene ID^*

107936080

107934488

107907335

827007

839404

103836552

106426937

111199884

106424218

102618010

102629850

100778830

100814360

100777799

100241872

100264542

7485477

7470101

11436303

11415850

101258656

101267352

102583943

102584225

107801189

107786337

4324984

4335615

100217192

100272273

123058978

123066135

123189021

123445145

123426499

8078703

8070950

100827535

100827359

5718748

The preparation time of this page was 1.3 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	1	3	2	3	2	3	2	2	2	1	2	2	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107958704 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107958704 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**