ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107958906	uncharacterized LOC107958906
ghi-r.1	107897926	uncharacterized LOC107897926
ghi-r.1	107901354	uncharacterized LOC107901354
ghi-r.1	107906858	uncharacterized LOC107906858
ath-u.5	AT2G12400	plasma membrane fusion protein
ath-u.5	AT2G25270	uncharacterized protein
bra-r.6	103842197	uncharacterized LOC103842197
bra-r.6	103860363	uncharacterized LOC103860363
bra-r.6	103837649	uncharacterized LOC103837649
bna-r.1	106439763	uncharacterized LOC106439763
bna-r.1	106416294	uncharacterized LOC106416294
bna-r.1	106366314	uncharacterized LOC106366314
cit-r.1	102624145	uncharacterized LOC102624145
cit-r.1	102612751	uncharacterized LOC102612751
gma-u.5	100797376	transmembrane protein DDB_G0292058
gma-u.5	100809927	uncharacterized LOC100809927
gma-u.5	100816139	uncharacterized LOC100816139
vvi-u.5	100267143	uncharacterized LOC100267143
ppo-u.5	7458393	uncharacterized LOC7458393
ppo-u.5	18100696	uncharacterized LOC18100696
ppo-u.5	7489486	uncharacterized LOC7489486
mtr-u.5	11431491	uncharacterized LOC11431491
mtr-u.5	25488325	uncharacterized LOC25488325
sly-u.5	101266232	uncharacterized LOC101266232
sly-u.5	101259959	uncharacterized LOC101259959
sot-r.1	102580486	uncharacterized LOC102580486
sot-r.1	102580528	uncharacterized LOC102580528
nta-r.1	107817302	uncharacterized LOC107817302
nta-r.1	107766443	uncharacterized LOC107766443
nta-r.1	107772213	uncharacterized LOC107772213
osa-u.5	4331029	uncharacterized LOC4331029
zma-u.5	100280170	uncharacterized LOC100280170
tae-r.2	123128820	uncharacterized LOC123128820
tae-r.2	123139229	uncharacterized LOC123139229
tae-r.2	123145962	uncharacterized LOC123145962
hvu-r.1	123401211	uncharacterized LOC123401211
sbi-r.1	110434930	uncharacterized LOC110434930
bdi-r.1	100835724	uncharacterized LOC100835724

Top 50 coexpressed genes to 107958906 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107958906 (ghi-r.1 coexpression data)

CoexMap"107958906"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009506 [list] [network] plasmodesma	(373 genes)	IEA
GO:0005886 [list] [network] plasma membrane	(2553 genes)	IEA

GO MF

Protein

XP_016750304.2 [sequence] [blastp]

Subcellular
localization
wolf

plas 6, golg 1, cyto 1, vacu 1, E.R. 1, E.R._vacu 1, cyto_E.R. 1

(predict for XP_016750304.2)

Subcellular
localization
TargetP

scret 7

(predict for XP_016750304.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107958906	ghi-r.1 for 107897926	ghi-r.1 for 107901354	ghi-r.1 for 107906858	ath-u.5 for AT2G12400	ath-u.5 for AT2G25270	bra-r.6 for 103842197	bra-r.6 for 103860363	bra-r.6 for 103837649	bna-r.1 for 106439763	bna-r.1 for 106416294	bna-r.1 for 106366314	cit-r.1 for 102624145	cit-r.1 for 102612751	gma-u.5 for 100797376	gma-u.5 for 100809927	gma-u.5 for 100816139	vvi-u.5 for 100267143	ppo-u.5 for 7458393	ppo-u.5 for 18100696	ppo-u.5 for 7489486	mtr-u.5 for 11431491	mtr-u.5 for 25488325	sly-u.5 for 101266232	sly-u.5 for 101259959	sot-r.1 for 102580486	sot-r.1 for 102580528	nta-r.1 for 107817302	nta-r.1 for 107766443	nta-r.1 for 107772213	osa-u.5 for 4331029	zma-u.5 for 100280170	tae-r.2 for 123128820	tae-r.2 for 123139229	tae-r.2 for 123145962	hvu-r.1 for 123401211	sbi-r.1 for 110434930	bdi-r.1 for 100835724

Ortholog

Ortholog ID: 3900

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC107897926

uncharacterized LOC107906858

uncharacterized LOC107946544

plasma membrane fusion protein

uncharacterized protein

uncharacterized LOC103842197

uncharacterized LOC103860363

uncharacterized LOC103837649

uncharacterized LOC106439763

uncharacterized LOC106366314

uncharacterized LOC106368570

uncharacterized LOC102624145

uncharacterized LOC102612751

transmembrane protein DDB_G0292058

uncharacterized LOC100816139

uncharacterized LOC100798323

uncharacterized LOC100267143

uncharacterized LOC7458393

uncharacterized LOC7489486

uncharacterized LOC18099886

uncharacterized LOC11431491

uncharacterized LOC25488325

uncharacterized LOC101266232

uncharacterized LOC101259959

uncharacterized LOC102580486

uncharacterized LOC102580528

uncharacterized LOC107817302

uncharacterized LOC107766443

uncharacterized LOC107772213

uncharacterized LOC4331029

uncharacterized LOC100280170

uncharacterized LOC123128820

uncharacterized LOC123139229

uncharacterized LOC123145962

uncharacterized LOC123401211

uncharacterized LOC110434930

uncharacterized LOC100835724

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	3
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	2
bra04145	Phagosome	2
bra04016	MAPK signaling pathway - plant	2
bra04075	Plant hormone signal transduction	2
bra00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00053	Ascorbate and aldarate metabolism	2
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00600	Sphingolipid metabolism	2
ppo00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00900	Terpenoid backbone biosynthesis	3
mtr00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
mtr00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00260	Glycine, serine and threonine metabolism	3
nta00630	Glyoxylate and dicarboxylate metabolism	3
nta00670	One carbon pool by folate	3
nta00785	Lipoic acid metabolism	3
nta01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00250	Alanine, aspartate and glutamate metabolism	2
nta00410	beta-Alanine metabolism	2
nta00430	Taurine and hypotaurine metabolism	2
nta00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00250	Alanine, aspartate and glutamate metabolism	2
nta00410	beta-Alanine metabolism	2
nta00430	Taurine and hypotaurine metabolism	2
nta00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00100	Steroid biosynthesis	2
osa00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3
tae04136	Autophagy - other	3
tae04382	Cornified envelope formation	3
tae00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	3
tae03015	mRNA surveillance pathway	2
tae04136	Autophagy - other	2
tae04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	3
tae03015	mRNA surveillance pathway	2
tae04136	Autophagy - other	2
tae04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04146	Peroxisome	2
bdi04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

107897926

107906858

107946544

815712

817065

103842197

103860363

103837649

106439763

106366314

106368570

102624145

102612751

100797376

100816139

100798323

100267143

7458393

7489486

18099886

11431491

25488325

101266232

101259959

102580486

102580528

107817302

107766443

107772213

4331029

100280170

123128820

123139229

123145962

123401211

110434930

100835724

The preparation time of this page was 2.7 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	3	2	3	1	3	2	2	2	3	1	1	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107958906 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107958906 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**