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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107959710   agamous-like MADS-box protein AGL1 
 ath-u.5   AG   K-box region and MADS-box transcription factor family protein 
 ath-u.5   STK   K-box region and MADS-box transcription factor family protein 
 gma-u.5   100782733   agamous-like MADS-box protein MADS1 
 gma-u.5   AGL11   MADS domain transporter AGL11 
 gma-u.5   100776263   floral homeotic protein AGAMOUS-like 
 vvi-u.5   MADS1   MAD-box transcripion factor 
 vvi-u.5   AG   agamous 
 vvi-u.5   MADS5   MADS-box protein 5 
 sly-u.5   TAGL1   TAGL1 transcription factor 
 sly-u.5   AG1   floral homeotic protein AGAMOUS 
 osa-u.5   4338067   MADS-box transcription factor 58-like 
 osa-u.5   4324888   MADS-box transcription factor 21-like 
 zma-u.5   100037764   AGAMOUS-like protein 
 zma-u.5   542039   MADS-box transcription factor 21 
 zma-u.5   542244   homologue of Arabidopsis gene AGAMOUS 

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Top 50 coexpressed genes to 107959710 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107959710 (ghi-r.1 coexpression data)

CoexMap"107959710"


ghiLOC107959710 | Entrez gene ID : 107959710    
Species ghi ath gma vvi sly osa zma bdi mtr bra hvu cit bna ppo sbi sot nta cre tae
Paralog 1 2 3 3 2 2 3 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (349 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (605 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (729 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (1206 genes)  IEA  
Protein NP_001314631.1 [sequence] [blastp]
XP_016751324.2 [sequence] [blastp]
XP_016751326.2 [sequence] [blastp]
XP_016751327.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_001314631.1)
nucl 9  (predict for XP_016751324.2)
nucl 9,  chlo 1,  pero 1  (predict for XP_016751326.2)
nucl 9  (predict for XP_016751327.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001314631.1)
other 9  (predict for XP_016751324.2)
other 9  (predict for XP_016751326.2)
other 9  (predict for XP_016751327.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107959710
ath-u.5
for
AG
ath-u.5
for
STK
gma-u.5
for
100782733
gma-u.5
for
AGL11
gma-u.5
for
100776263
vvi-u.5
for
MADS1
vvi-u.5
for
AG
vvi-u.5
for
MADS5
sly-u.5
for
TAGL1
sly-u.5
for
AG1
osa-u.5
for
4338067
osa-u.5
for
4324888
zma-u.5
for
100037764
zma-u.5
for
542039
zma-u.5
for
542244


Ortholog ID: 775
Species ghi ghi ath bra bra bna bna cit gma gma vvi vvi sly sly osa osa zma zma tae tae sbi sbi bdi
Symbol LOC107914052 LOC107959674 SHP1 LOC103861026 LOC103866661 LOC106353173 LOC106428192 LOC102620453 LOC100808734 LOC100776263 AG MADS1 MBP3 AG1 LOC9271572 LOC4324888 LOC542244 LOC542037 LOC100136964 LOC100136965 LOC8080509 LOC110430121 LOC100824190
Function* agamous-like MADS-box protein AGL11 agamous-like MADS-box protein MADS1 K-box region and MADS-box transcription factor family protein floral homeotic protein AGAMOUS agamous-like MADS-box protein AGL5 agamous-like MADS-box protein AGL1 agamous-like MADS-box protein AGL1 agamous-like MADS-box protein AGL11 agamous-like MADS-box protein MADS1 floral homeotic protein AGAMOUS-like agamous MAD-box transcripion factor agamous-like MADS-box protein MBP3 floral homeotic protein AGAMOUS MADS-box transcription factor 3-like MADS-box transcription factor 21-like homologue of Arabidopsis gene AGAMOUS Agamous-like MADS-box protein AGL5 MADS-box transcription factor 21 MADS-box transcription factor 3 MADS-box transcription factor 3 MADS-box transcription factor 3-like MADS-box transcription factor 58-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00280 Valine, leucine and isoleucine degradation 2
ghi00640 Propanoate metabolism 2
ghi00785 Lipoic acid metabolism 2
ghi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00941 Flavonoid biosynthesis 3
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
sly00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00062 Fatty acid elongation 2
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
zma00010 Glycolysis / Gluconeogenesis 2
zma00053 Ascorbate and aldarate metabolism 2
zma00071 Fatty acid degradation 2
zma00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107914052 107959674 825047 103861026 103866661 106353173 106428192 102620453 100808734 100776263 100261787 100232864 101249093 543840 9271572 4324888 542244 542037 100136964 100136965 8080509 110430121 100824190
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