ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107961732	putative E3 ubiquitin-protein ligase RING1a
ath-u.5	RING1A	RING 1A
ath-u.5	RING1B	RING 1B
gma-u.5	100819311	putative E3 ubiquitin-protein ligase RING1a
gma-u.5	100801911	putative E3 ubiquitin-protein ligase RING1a
vvi-u.5	100267448	putative E3 ubiquitin-protein ligase RING1a
vvi-u.5	100267677	putative E3 ubiquitin-protein ligase RING1a
ppo-u.5	18106779	putative E3 ubiquitin-protein ligase RING1a
ppo-u.5	7459955	putative E3 ubiquitin-protein ligase RING1a
ppo-u.5	7456782	putative E3 ubiquitin-protein ligase RING1a
mtr-u.5	25493116	putative E3 ubiquitin-protein ligase RING1a
sly-u.5	101248496	putative E3 ubiquitin-protein ligase RING1a
sly-u.5	101258122	putative E3 ubiquitin-protein ligase RING1a
osa-u.5	9272357	putative E3 ubiquitin-protein ligase RING1a
osa-u.5	4327619	putative E3 ubiquitin-protein ligase RING1a
zma-u.5	100279610	putative RING zinc finger domain superfamily protein
zma-u.5	100383546	putative RING zinc finger domain superfamily protein
zma-u.5	100281596	Putative E3 ubiquitin-protein ligase RING1

Top 50 coexpressed genes to 107961732 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107961732 (ghi-r.1 coexpression data)

CoexMap"107961732"

[Cytoscape]

Annotation

functional annotation

KEGG

ghi03083 [list] [network] Polycomb repressive complex (148 genes)

GO BP

GO CC

GO MF

Protein

XP_016753313.1 [sequence] [blastp]
XP_016753314.1 [sequence] [blastp]
XP_040971264.1 [sequence] [blastp]
XP_040971265.1 [sequence] [blastp]
XP_040971266.1 [sequence] [blastp]
XP_040971267.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_016753313.1)
nucl 10	(predict for XP_016753314.1)
nucl 10	(predict for XP_040971264.1)
nucl 10	(predict for XP_040971265.1)
nucl 6, chlo 1, mito 1, plas 1, extr 1, mito_plas 1	(predict for XP_040971266.1)
nucl 6, chlo 1, mito 1, plas 1, extr 1, mito_plas 1	(predict for XP_040971267.1)

Subcellular
localization
TargetP

other 8	(predict for XP_016753313.1)
other 8	(predict for XP_016753314.1)
other 8	(predict for XP_040971264.1)
other 8	(predict for XP_040971265.1)
mito 5	(predict for XP_040971266.1)
mito 5	(predict for XP_040971267.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107961732	ath-u.5 for RING1A	ath-u.5 for RING1B	gma-u.5 for 100819311	gma-u.5 for 100801911	vvi-u.5 for 100267448	vvi-u.5 for 100267677	ppo-u.5 for 18106779	ppo-u.5 for 7459955	ppo-u.5 for 7456782	mtr-u.5 for 25493116	sly-u.5 for 101248496	sly-u.5 for 101258122	osa-u.5 for 9272357	osa-u.5 for 4327619	zma-u.5 for 100279610	zma-u.5 for 100383546	zma-u.5 for 100281596

Ortholog

Ortholog ID: 2297

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LOC107934721

LOC107901798

RING1A

RING1B

Function^*

putative E3 ubiquitin-protein ligase RING1a

RING 1A

RING 1B

putative E3 ubiquitin-protein ligase RING1a

putative E3 ubiquitin-protein ligase RING1b

putative E3 ubiquitin-protein ligase RING1a

putative RING zinc finger domain superfamily protein

putative E3 ubiquitin-protein ligase RING1a

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	13
ghi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03083	Polycomb repressive complex	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5
gma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5
mtr01240	Biosynthesis of cofactors	2
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03020	RNA polymerase	5
sot03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	2
nta03013	Nucleocytoplasmic transport	2
nta00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	2
nta03013	Nucleocytoplasmic transport	2
nta00330	Arginine and proline metabolism	2
nta03022	Basal transcription factors	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	3
zma03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	6
tae04016	MAPK signaling pathway - plant	3
tae04626	Plant-pathogen interaction	3
tae03082	ATP-dependent chromatin remodeling	3
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04626	Plant-pathogen interaction	2
bdi03083	Polycomb repressive complex	2
bdi01200	Carbon metabolism	2
bdi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03083	Polycomb repressive complex	2

Expression

Expression pattern

Entrez Gene ID^*

107934721

107901798

834451

839413

103839324

103827915

106401059

106418239

102608198

102616925

100776547

100267677

100267448

18103053

7456782

25487685

25493116

101258122

101248496

102605523

102581735

107777823

107798106

9272357

4327619

100279610

100383546

123079431

123138311

123444611

123443642

8060463

8065145

100846593

100833980

5724229

The preparation time of this page was 0.2 [sec].


Species	ghi	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	sot	nta	cre	tae
Paralog	1	2	2	2	3	1	2	2	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107961732 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107961732 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**