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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107962598   topless-related protein 4 
 ghi-r.1   107906445   protein TOPLESS 
 ghi-r.1   107909067   protein TOPLESS-RELATED PROTEIN 2 
 ghi-r.1   107901318   topless-related protein 4 
 ath-u.5   WSIP2   WUS-interacting protein 2 
 ath-u.5   TPR2   TOPLESS-related 2 
 ath-u.5   TPR3   TOPLESS-related 3 
 bra-r.6   103854682   topless-related protein 3 
 bra-r.6   103842887   protein TOPLESS 
 bra-r.6   103859646   topless-related protein 4 
 bna-r.1   125600802   topless-related protein 3-like 
 bna-r.1   125581868   topless-related protein 3-like 
 bna-r.1   125580837   topless-related protein 3 
 cit-r.1   102617078   topless-related protein 4 
 cit-r.1   102624824   topless-related protein 2 
 cit-r.1   102607545   protein TOPLESS-RELATED PROTEIN 2-like 
 gma-u.5   100793517   topless-related protein 3 
 gma-u.5   100790282   topless-related protein 1 
 gma-u.5   100782671   protein TOPLESS 
 vvi-u.5   100262752   topless-related protein 1 
 vvi-u.5   100244059   topless-related protein 4 
 vvi-u.5   100247343   topless-related protein 4 
 ppo-u.5   7481713   topless-related protein 3 
 ppo-u.5   18096682   topless-related protein 1 
 ppo-u.5   7489126   topless-related protein 1 
 mtr-u.5   11423151   topless-related protein 3 
 mtr-u.5   11420997   topless-related protein 1 
 sly-u.5   101252765   protein TOPLESS 
 sly-u.5   101250003   topless-related protein 4 
 sly-u.5   101248902   protein TOPLESS-RELATED PROTEIN 2-like 
 sot-r.1   102590171   topless-related protein 3 
 sot-r.1   102596120   topless-related protein 1-like 
 sot-r.1   102596956   topless-related protein 1-like 
 nta-r.1   107788167   topless-related protein 4 
 nta-r.1   107793024   protein TOPLESS-RELATED PROTEIN 2 
 nta-r.1   107811210   topless-related protein 4 
 osa-u.5   TPR3   protein TPR3-like 
 osa-u.5   4327709   protein TPR1-like 
 osa-u.5   4344728   protein TOPLESS-RELATED PROTEIN 2-like 
 zma-u.5   103634695   protein TPR1 
 zma-u.5   103649954   protein TPR1 
 tae-r.2   123060960   protein TPR1 
 tae-r.2   123069556   protein TPR1 
 hvu-r.1   123443393   protein TPR1 
 hvu-r.1   123410003   protein TOPLESS-RELATED PROTEIN 2 
 hvu-r.1   123449126   protein TPR3 
 sbi-r.1   110433802   protein TPR1 
 sbi-r.1   8054324   protein TPR3 
 sbi-r.1   8080859   protein TPR2 
 bdi-r.1   100832352   protein TPR2 
 bdi-r.1   100832687   protein TPR3 
 bdi-r.1   100834097   protein TPR1 

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Top 50 coexpressed genes to 107962598 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107962598 (ghi-r.1 coexpression data)

CoexMap"107962598"


ghiLOC107962598 | Entrez gene ID : 107962598    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 3 3 3 3 3 3 2 3 3 3 3 2 2 3 3 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (4318 genes)  IEA  
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016754533.2 [sequence] [blastp]
XP_016754534.2 [sequence] [blastp]
XP_016754535.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 4  (predict for XP_016754533.2)
chlo 5,  nucl 4  (predict for XP_016754534.2)
nucl 5,  chlo 4  (predict for XP_016754535.2)
Subcellular
localization
TargetP
scret 5,  other 4  (predict for XP_016754533.2)
scret 5,  other 4  (predict for XP_016754534.2)
scret 5,  other 4  (predict for XP_016754535.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107962598
ghi-r.1
for
107906445
ghi-r.1
for
107909067
ghi-r.1
for
107901318
ath-u.5
for
WSIP2
ath-u.5
for
TPR2
ath-u.5
for
TPR3
bra-r.6
for
103854682
bra-r.6
for
103842887
bra-r.6
for
103859646
bna-r.1
for
125600802
bna-r.1
for
125581868
bna-r.1
for
125580837
cit-r.1
for
102617078
cit-r.1
for
102624824
cit-r.1
for
102607545
gma-u.5
for
100793517
gma-u.5
for
100790282
gma-u.5
for
100782671
vvi-u.5
for
100262752
vvi-u.5
for
100244059
vvi-u.5
for
100247343
ppo-u.5
for
7481713
ppo-u.5
for
18096682
ppo-u.5
for
7489126
mtr-u.5
for
11423151
mtr-u.5
for
11420997
sly-u.5
for
101252765
sly-u.5
for
101250003
sly-u.5
for
101248902
sot-r.1
for
102590171
sot-r.1
for
102596120
sot-r.1
for
102596956
nta-r.1
for
107788167
nta-r.1
for
107793024
nta-r.1
for
107811210
osa-u.5
for
TPR3
osa-u.5
for
4327709
osa-u.5
for
4344728
zma-u.5
for
103634695
zma-u.5
for
103649954
tae-r.2
for
123060960
tae-r.2
for
123069556
hvu-r.1
for
123443393
hvu-r.1
for
123410003
hvu-r.1
for
123449126
sbi-r.1
for
110433802
sbi-r.1
for
8054324
sbi-r.1
for
8080859
bdi-r.1
for
100832352
bdi-r.1
for
100832687
bdi-r.1
for
100834097


Ortholog ID: 377
Species ghi ghi ghi ath ath ath bra bra bra bna bna bna cit cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi
Symbol LOC107957517 LOC121204747 LOC121229336 WSIP2 TPL TPR1 LOC103854682 LOC103842887 LOC103869731 LOC106406158 LOC106349833 LOC106439427 LOC102624824 LOC102608406 LOC102607647 LOC100790282 LOC100798219 LOC100800771 LOC100244059 LOC100247343 LOC100248092 LOC18096682 LOC18094856 LOC7459881 LOC11420997 LOC11418697 LOC101262960 LOC101248801 LOC101244499 LOC102596120 LOC107058255 LOC102581018 LOC107818525 LOC107776850 LOC107832581 TPR3 LOC4327709 LOC4344728 LOC103634695 LOC100381576 LOC100193888 LOC123159638 LOC123085314 LOC123443393 LOC123410003 LOC123449126 LOC110433802 LOC8054324 LOC8080859 LOC100832352 LOC100832687 LOC100834097
Function* topless-related protein 1 protein TOPLESS-RELATED PROTEIN 2 protein TOPLESS WUS-interacting protein 2 Transducin family protein / WD-40 repeat family protein TOPLESS-related 1 topless-related protein 3 protein TOPLESS topless-related protein 2 topless-related protein 4-like protein TOPLESS topless-related protein 4 topless-related protein 2 topless-related protein 3 topless-related protein 4-like topless-related protein 1 topless-related protein 1 topless-related protein 3 topless-related protein 4 topless-related protein 4 protein TOPLESS topless-related protein 1 protein TOPLESS topless-related protein 4 topless-related protein 1 topless-related protein 1 topless-related protein 3 topless-related protein 1-like topless-related protein 4-like topless-related protein 1-like topless-related protein 1-like protein TOPLESS-like topless-related protein 1 topless-related protein 3 topless-related protein 3-like protein TPR3-like protein TPR1-like protein TOPLESS-RELATED PROTEIN 2-like protein TPR1 uncharacterized LOC100381576 uncharacterized LOC100193888 protein TPR1 protein TPR3 protein TPR1 protein TOPLESS-RELATED PROTEIN 2 protein TPR3 protein TPR1 protein TPR3 protein TPR2 protein TPR2 protein TPR3 protein TPR1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 2
ghi05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03082 ATP-dependent chromatin remodeling 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 2
ghi05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 4
ath03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma00190 Oxidative phosphorylation 2
gma04075 Plant hormone signal transduction 2
gma00260 Glycine, serine and threonine metabolism 2
gma00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 5
ppo04144 Endocytosis 3
ppo04142 Lysosome 2
ppo05100 Bacterial invasion of epithelial cells 2
ppo04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00511 Other glycan degradation 2
nta00513 Various types of N-glycan biosynthesis 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta00531 Glycosaminoglycan degradation 2
nta00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 2
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03083 Polycomb repressive complex 2
zma03250 Viral life cycle - HIV-1 2
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
tae00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04146 Peroxisome 2
hvu03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00650 Butanoate metabolism 2
sbi00561 Glycerolipid metabolism 2
sbi01200 Carbon metabolism 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 5
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
sbi04136 Autophagy - other 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 3
bdi04142 Lysosome 2
bdi05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
bdi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107957517 121204747 121229336 820831 838144 844388 103854682 103842887 103869731 106406158 106349833 106439427 102624824 102608406 102607647 100790282 100798219 100800771 100244059 100247343 100248092 18096682 18094856 7459881 11420997 11418697 101262960 101248801 101244499 102596120 107058255 102581018 107818525 107776850 107832581 4332285 4327709 4344728 103634695 100381576 100193888 123159638 123085314 123443393 123410003 123449126 110433802 8054324 8080859 100832352 100832687 100834097
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