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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107962954   small RNA 2'-O-methyltransferase 
 ath-u.5   HEN1   double-stranded RNA binding protein-related / DsRBD protein-like protein 
 gma-u.5   HEN1A   protein Hua enhancer 1a 
 gma-u.5   HEN1B   protein Hua enhancer 1b 
 vvi-u.5   100259382   small RNA 2'-O-methyltransferase 
 ppo-u.5   18103519   small RNA 2'-O-methyltransferase 
 ppo-u.5   7471687   small RNA 2'-O-methyltransferase 
 mtr-u.5   25493375   small RNA 2'-O-methyltransferase 
 sly-u.5   101264590   small RNA 2'-O-methyltransferase 
 osa-u.5   4342471   small RNA 2'-O-methyltransferase 
 zma-u.5   103637342   small RNA 2'-O-methyltransferase 
 zma-u.5   103631972   small RNA 2'-O-methyltransferase 

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Top 50 coexpressed genes to 107962954 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107962954 (ghi-r.1 coexpression data)

CoexMap"107962954"


ghiLOC107962954 | Entrez gene ID : 107962954    
Species ghi ath gma vvi ppo mtr sly osa zma hvu bna cit bra sbi bdi nta tae cre sot
Paralog 1 1 2 1 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0034587 [list] [network] piRNA processing  (2 genes)  IEA  
GO:0030422 [list] [network] siRNA processing  (34 genes)  IEA  
GO:0015074 [list] [network] DNA integration  (103 genes)  IEA  
GO:0001510 [list] [network] RNA methylation  (122 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0008171 [list] [network] O-methyltransferase activity  (106 genes)  IEA  
GO:0008173 [list] [network] RNA methyltransferase activity  (127 genes)  IEA  
GO:0003755 [list] [network] peptidyl-prolyl cis-trans isomerase activity  (147 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (9083 genes)  IEA  
Protein XP_016755026.2 [sequence] [blastp]
XP_016755027.1 [sequence] [blastp]
XP_016755028.1 [sequence] [blastp]
XP_040970645.1 [sequence] [blastp]
XP_040970646.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 2,  cyto 1,  cysk 1  (predict for XP_016755026.2)
nucl 4,  chlo 2,  cyto 1,  cysk 1  (predict for XP_016755027.1)
chlo 4,  nucl 4,  cyto 1,  cysk 1,  golg_plas 1  (predict for XP_016755028.1)
nucl 5,  chlo 1,  plas 1,  cyto 1,  vacu 1,  golg 1,  chlo_mito 1,  cysk_plas 1,  E.R._plas 1,  mito_plas 1  (predict for XP_040970645.1)
nucl 6,  cyto 1,  chlo 1,  plas 1,  E.R. 1,  golg 1,  golg_plas 1,  cyto_pero 1,  E.R._plas 1  (predict for XP_040970646.1)
Subcellular
localization
TargetP
other 6  (predict for XP_016755026.2)
other 6  (predict for XP_016755027.1)
other 6  (predict for XP_016755028.1)
other 6  (predict for XP_040970645.1)
other 6  (predict for XP_040970646.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107962954
ath-u.5
for
HEN1
gma-u.5
for
HEN1A
gma-u.5
for
HEN1B
vvi-u.5
for
100259382
ppo-u.5
for
18103519
ppo-u.5
for
7471687
mtr-u.5
for
25493375
sly-u.5
for
101264590
osa-u.5
for
4342471
zma-u.5
for
103637342
zma-u.5
for
103631972


Ortholog ID: 6305
Species ghi ghi ath bra bna bna cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma zma tae tae hvu sbi bdi cre
Symbol LOC107962954 LOC121203428 HEN1 LOC103858478 LOC106375681 LOC106375682 LOC102613903 HEN1B HEN1A LOC100259382 LOC7471687 LOC18103519 LOC25493375 LOC101264590 LOC102595903 LOC107768656 LOC107779312 LOC4342471 LOC103637342 LOC103631972 LOC123052816 LOC123048735 LOC123426220 LOC8081159 LOC100832180 CHLRE_03g191200v5
Function* small RNA 2'-O-methyltransferase small RNA 2'-O-methyltransferase double-stranded RNA binding protein-related / DsRBD protein-like protein small RNA 2'-O-methyltransferase small RNA 2'-O-methyltransferase small RNA 2'-O-methyltransferase small RNA 2'-O-methyltransferase-like protein Hua enhancer 1b protein Hua enhancer 1a small RNA 2'-O-methyltransferase small RNA 2'-O-methyltransferase small RNA 2'-O-methyltransferase small RNA 2'-O-methyltransferase small RNA 2'-O-methyltransferase small RNA 2'-O-methyltransferase small RNA 2'-O-methyltransferase-like small RNA 2'-O-methyltransferase small RNA 2'-O-methyltransferase small RNA 2'-O-methyltransferase small RNA 2'-O-methyltransferase small RNA 2'-O-methyltransferase small RNA 2'-O-methyltransferase small RNA 2'-O-methyltransferase small RNA 2'-O-methyltransferase small RNA 2'-O-methyltransferase uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 2
ghi01240 Biosynthesis of cofactors 2
ghi03083 Polycomb repressive complex 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 4
ghi01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03030 DNA replication 3
ath03410 Base excision repair 3
ath03420 Nucleotide excision repair 3
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03013 Nucleocytoplasmic transport 6
bna03250 Viral life cycle - HIV-1 6
bna03083 Polycomb repressive complex 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 7
vvi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 4
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 3
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 4
zma03015 mRNA surveillance pathway 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
tae03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
sbi03083 Polycomb repressive complex 2
sbi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107962954 121203428 827839 103858478 106375681 106375682 102613903 100785461 100815299 100259382 7471687 18103519 25493375 101264590 102595903 107768656 107779312 4342471 103637342 103631972 123052816 123048735 123426220 8081159 100832180 66052939
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