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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   109945128   photosystem II reaction center PSB28 protein, chloroplastic 
 zma-r.6   109945128   photosystem II reaction center PSB28 protein, chloroplastic 
 zma-u.5   103650783   photosystem II reaction center PSB28 protein, chloroplastic 
 zma-u.5   103636309   photosystem II reaction center PSB28 protein, chloroplastic-like 
 zma-u.5   100284876   photosystem II reaction center W protein 
 sbi-r.1   8081314   photosystem II reaction center PSB28 protein, chloroplastic 
 osa-u.5   4326537   photosystem II reaction center PSB28 protein, chloroplastic-like 
 tae-r.2   123114179   photosystem II reaction center PSB28 protein, chloroplastic 
 tae-r.2   123123666   photosystem II reaction center PSB28 protein, chloroplastic 
 tae-r.2   123062562   photosystem II reaction center PSB28 protein, chloroplastic 
 hvu-r.1   123394947   photosystem II reaction center PSB28 protein, chloroplastic-like 
 hvu-r.1   123440539   photosystem II reaction center PSB28 protein, chloroplastic-like 
 bdi-r.1   100840188   photosystem II reaction center PSB28 protein, chloroplastic 
 ath-u.5   PSB28   photosystem II reaction center PSB28 protein 
 gma-u.5   100780777   photosystem II reaction center PSB28 protein, chloroplastic 
 gma-u.5   100306491   photosystem II reaction center PSB28-like 
 sly-u.5   101245880   photosystem II reaction center Psb28 protein 
 bra-r.6   103854241   photosystem II reaction center PSB28 protein, chloroplastic 
 bra-r.6   103861848   photosystem II reaction center PSB28 protein, chloroplastic 
 vvi-u.5   100260011   photosystem II reaction center PSB28 protein, chloroplastic 
 ppo-u.5   7459542   photosystem II reaction center PSB28 protein, chloroplastic 
 mtr-u.5   25484200   photosystem II reaction center PSB28 protein, chloroplastic 
 ghi-r.1   107952737   photosystem II reaction center PSB28 protein, chloroplastic 
 ghi-r.1   121232332   photosystem II reaction center PSB28 protein, chloroplastic 
 bna-r.1   106401791   photosystem II reaction center PSB28 protein, chloroplastic 
 bna-r.1   106411346   photosystem II reaction center PSB28 protein, chloroplastic 
 bna-r.1   111207700   photosystem II reaction center PSB28 protein, chloroplastic 
 sot-r.1   102586634   photosystem II reaction center Psb28 protein 
 cit-r.1   102611091   photosystem II reaction center PSB28 protein, chloroplastic 
 nta-r.1   107768014   photosystem II reaction center Psb28 protein-like 
 nta-r.1   107797030   photosystem II reaction center Psb28 protein 
 cre-r.1   CHLRE_10g440450v5   uncharacterized protein 

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Top 50 coexpressed genes to 109945128 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 109945128 (zma-u.5 coexpression data)

CoexMap"109945128"


zmaLOC109945128 | Entrez gene ID : 109945128    
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 5 1 1 3 2 1 1 2 1 2 1 1 1 2 3 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma00195 [list] [network] Photosynthesis (146 genes)
GO BP
GO:0015979 [list] [network] photosynthesis  (149 genes)  IEA  
GO CC
GO:0009654 [list] [network] photosystem II oxygen evolving complex  (32 genes)  IEA  
GO:0009523 [list] [network] photosystem II  (52 genes)  IEA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (153 genes)  IEA  
GO MF
Protein XP_020406531.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 1,  nucl 1,  cyto 1,  cyto_nucl 1,  cyto_mito 1,  mito_plas 1  (predict for XP_020406531.1)
Subcellular
localization
TargetP
mito 7  (predict for XP_020406531.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
109945128
zma-r.6
for
109945128
zma-u.5
for
103650783
zma-u.5
for
103636309
zma-u.5
for
100284876
sbi-r.1
for
8081314
osa-u.5
for
4326537
tae-r.2
for
123114179
tae-r.2
for
123123666
tae-r.2
for
123062562
hvu-r.1
for
123394947
hvu-r.1
for
123440539
bdi-r.1
for
100840188
ath-u.5
for
PSB28
gma-u.5
for
100780777
gma-u.5
for
100306491
sly-u.5
for
101245880
bra-r.6
for
103854241
bra-r.6
for
103861848
vvi-u.5
for
100260011
ppo-u.5
for
7459542
mtr-u.5
for
25484200
ghi-r.1
for
107952737
ghi-r.1
for
121232332
bna-r.1
for
106401791
bna-r.1
for
106411346
bna-r.1
for
111207700
sot-r.1
for
102586634
cit-r.1
for
102611091
nta-r.1
for
107768014
nta-r.1
for
107797030
cre-r.1
for
CHLRE_10g440450v5


Ortholog ID: 5811
Species zma zma zma sbi osa tae tae tae hvu hvu bdi ath gma gma sly bra bra vvi ppo mtr ghi ghi bna bna bna sot cit nta nta cre
Symbol LOC109945128 LOC103636309 LOC100284876 LOC8081314 LOC4326537 LOC123062562 LOC123079721 LOC123087755 LOC123394947 LOC123440539 LOC100840188 PSB28 LOC100780777 LOC100306491 LOC101245880 LOC103854241 LOC103861848 LOC100260011 LOC7459542 LOC25484200 LOC107952737 LOC121232332 LOC106411346 LOC111207700 LOC106389780 LOC102586634 LOC102611091 LOC107768014 LOC107797030 CHLRE_10g440450v5
Function* photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic-like photosystem II reaction center W protein photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic-like photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic-like photosystem II reaction center PSB28 protein, chloroplastic-like photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28-like photosystem II reaction center Psb28 protein photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center Psb28 protein photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center Psb28 protein-like photosystem II reaction center Psb28 protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 10
zma00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
tae04712 Circadian rhythm - plant 2
tae04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 9
tae00010 Glycolysis / Gluconeogenesis 3
tae00030 Pentose phosphate pathway 3
tae00051 Fructose and mannose metabolism 3
tae00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 8
hvu00710 Carbon fixation by Calvin cycle 5
hvu00630 Glyoxylate and dicarboxylate metabolism 5
hvu00195 Photosynthesis 4
hvu00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 6
bdi01200 Carbon metabolism 6
bdi00710 Carbon fixation by Calvin cycle 4
bdi00260 Glycine, serine and threonine metabolism 2
bdi00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 3
ath00710 Carbon fixation by Calvin cycle 2
ath01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 4
gma00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 8
gma00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 4
sly01200 Carbon metabolism 3
sly00260 Glycine, serine and threonine metabolism 2
sly00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 7
bra00195 Photosynthesis 2
bra00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 4
vvi00710 Carbon fixation by Calvin cycle 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00710 Carbon fixation by Calvin cycle 6
ppo01200 Carbon metabolism 6
ppo00195 Photosynthesis 3
ppo00620 Pyruvate metabolism 2
ppo00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
ghi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 4
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 5
cit01200 Carbon metabolism 4
cit00010 Glycolysis / Gluconeogenesis 2
cit00710 Carbon fixation by Calvin cycle 2
cit00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta00195 Photosynthesis 2
nta00053 Ascorbate and aldarate metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
nta00195 Photosynthesis 2
nta00053 Ascorbate and aldarate metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00195 Photosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 109945128 103636309 100284876 8081314 4326537 123062562 123079721 123087755 123394947 123440539 100840188 828984 100780777 100306491 101245880 103854241 103861848 100260011 7459542 25484200 107952737 121232332 106411346 111207700 106389780 102586634 102611091 107768014 107797030 5716125
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