ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	110429749	mRNA-decapping enzyme-like protein
zma-u.5	100279265	Dcp1-like decapping family
zma-u.5	100282788	uncharacterized LOC100282788
zma-u.5	100216708	uncharacterized LOC100216708
osa-u.5	4342837	mRNA-decapping enzyme-like protein
osa-u.5	4351547	mRNA-decapping enzyme-like protein
ath-u.5	DCP1	decapping 1
gma-u.5	100780081	mRNA-decapping enzyme-like protein
gma-u.5	100786833	mRNA-decapping enzyme-like protein
gma-u.5	100814161	mRNA-decapping enzyme-like protein
sly-u.5	101247742	mRNA-decapping enzyme-like protein
sly-u.5	101243815	mRNA-decapping enzyme-like protein
sly-u.5	101254498	mRNA-decapping enzyme-like protein
vvi-u.5	100242537	mRNA-decapping enzyme-like protein
vvi-u.5	100262105	mRNA-decapping enzyme-like protein
ppo-u.5	7460081	mRNA-decapping enzyme-like protein
ppo-u.5	18109444	mRNA-decapping enzyme-like protein
ppo-u.5	7465252	mRNA-decapping enzyme-like protein
mtr-u.5	11414400	mRNA-decapping enzyme-like protein
mtr-u.5	25499412	mRNA-decapping enzyme-like protein

Top 50 coexpressed genes to 110429749 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 110429749 (sbi-r.1 coexpression data)

CoexMap"110429749"

[Cytoscape]

Annotation

functional annotation

KEGG

sbi03018 [list] [network] RNA degradation (112 genes)

GO BP

GO:0031087 [list] [network] deadenylation-independent decapping of nuclear-transcribed mRNA	(4 genes)	IEA
GO:0000290 [list] [network] deadenylation-dependent decapping of nuclear-transcribed mRNA	(9 genes)	IEA
GO:0043085 [list] [network] positive regulation of catalytic activity	(49 genes)	IEA

GO CC

GO:0000932 [list] [network] P-body

(47 genes)

IEA

GO MF

GO:0008047 [list] [network] enzyme activator activity	(108 genes)	IEA
GO:0003729 [list] [network] mRNA binding	(267 genes)	IEA

Protein

XP_021301898.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, pero 2, nucl_plas 2, cyto_E.R. 2, nucl 1, plas 1

(predict for XP_021301898.1)

Subcellular
localization
TargetP

other 7

(predict for XP_021301898.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 110429749 .	zma-u.5 for 100279265 .	zma-u.5 for 100282788 .	zma-u.5 for 100216708 .	osa-u.5 for 4342837 .	osa-u.5 for 4351547 .	ath-u.5 for DCP1 .	gma-u.5 for 100780081 .	gma-u.5 for 100786833 .	gma-u.5 for 100814161 .	sly-u.5 for 101247742 .	sly-u.5 for 101243815 .	sly-u.5 for 101254498 .	vvi-u.5 for 100242537 .	vvi-u.5 for 100262105 .	ppo-u.5 for 7460081 .	ppo-u.5 for 18109444 .	ppo-u.5 for 7465252 .	mtr-u.5 for 11414400 .	mtr-u.5 for 25499412 .

Ortholog

Ortholog ID: 1818

Species

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

cre

sbi

sot

cit

bdi

nta

Symbol

DCP1

Function^*

decapping 1

mRNA-decapping enzyme-like protein-like

mRNA-decapping enzyme-like protein

uncharacterized LOC100194374

uncharacterized LOC100191586

mRNA-decapping enzyme-like protein

uncharacterized protein

mRNA-decapping enzyme-like protein

Coexmap

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Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	3
ath03250	Viral life cycle - HIV-1	2
ath03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	2
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4
sly03013	Nucleocytoplasmic transport	2
sly03015	mRNA surveillance pathway	2
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	2
osa03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	4
osa03040	Spliceosome	3
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	3
zma04382	Cornified envelope formation	3
zma03018	RNA degradation	2
zma04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	3
zma04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	3
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03013	Nucleocytoplasmic transport	2
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	2
ppo04144	Endocytosis	2
ppo03410	Base excision repair	2
ppo00790	Folate biosynthesis	2
ppo01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	2
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	6
tae04144	Endocytosis	3
tae04517	IgSF CAM signaling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	6
tae04144	Endocytosis	2
tae03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	2
ghi03250	Viral life cycle - HIV-1	2
ghi04141	Protein processing in endoplasmic reticulum	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	9
ghi00730	Thiamine metabolism	2
ghi01240	Biosynthesis of cofactors	2
ghi03018	RNA degradation	2
ghi00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	5
bna04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04144	Endocytosis	4
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	3
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03410	Base excision repair	3
bdi00710	Carbon fixation by Calvin cycle	3
bdi01200	Carbon metabolism	3
bdi00190	Oxidative phosphorylation	3
bdi03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2
nta03040	Spliceosome	2
nta03083	Polycomb repressive complex	2
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2
nta03018	RNA degradation	2
nta03015	mRNA surveillance pathway	2
nta03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

837357

100783361

100780081

101254498

101243815

4342837

4351547

100194374

100191586

103843401

103871583

100242537

100262105

18109444

7465252

25499412

11414400

123102982

123120140

123395679

123394949

107896331

107936789

106377036

106346339

66054104

110429749

8080187

102591744

102590364

107177484

100826695

100841064

107821837

107784986

The preparation time of this page was 0.1 [sec].


Species	sbi	zma	osa	ath	gma	sly	vvi	ppo	mtr	bra	nta	cre	hvu	cit	bdi	sot	tae	bna	ghi
Paralog	1	3	2	1	3	3	2	3	2	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 110429749 (sbi-r.1 coexpression data)

Top 50 enrichment test to 110429749 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**