ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	110429916	uncharacterized LOC110429916
sbi-r.1	8059223	uncharacterized LOC8059223
zma-u.5	100384257	RNA binding (RRM/RBD/RNP motifs) family protein
zma-u.5	103647171	uncharacterized LOC103647171
osa-u.5	4351244	uncharacterized LOC4351244
osa-u.5	4349535	uncharacterized LOC4349535
tae-r.2	123120563	uncharacterized LOC123120563
tae-r.2	123111438	uncharacterized LOC123111438
tae-r.2	123103249	uncharacterized LOC123103249
hvu-r.1	123398966	uncharacterized LOC123398966
bdi-r.1	100841785	uncharacterized LOC100841785
ath-u.5	AT2G28540	RNA binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT3G45630	RNA binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT5G60170	RNA binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100796804	uncharacterized LOC100796804
gma-u.5	100805811	uncharacterized LOC100805811
gma-u.5	100807521	uncharacterized LOC100807521
sly-u.5	101252746	endochitinase A-like
sly-u.5	101257555	uncharacterized LOC101257555
sly-u.5	101251877	uncharacterized LOC101251877
bra-r.6	103864897	uncharacterized LOC103864897
bra-r.6	103829751	uncharacterized LOC103829751
vvi-u.5	100267264	general negative regulator of transcription subunit 4
vvi-u.5	104880937	uncharacterized LOC104880937
ppo-u.5	7465293	uncharacterized LOC7465293
ppo-u.5	18100238	uncharacterized LOC18100238
ppo-u.5	7488143	uncharacterized LOC7488143
mtr-u.5	11406476	uncharacterized LOC11406476
mtr-u.5	25484052	uncharacterized LOC25484052
mtr-u.5	11417361	uncharacterized LOC11417361
ghi-r.1	121212695	uncharacterized LOC121212695
ghi-r.1	107959061	uncharacterized LOC107959061
ghi-r.1	107954061	uncharacterized LOC107954061
bna-r.1	106446890	uncharacterized LOC106446890
bna-r.1	125578995	uncharacterized LOC125578995
bna-r.1	111212893	uncharacterized LOC111212893
sot-r.1	107058215	uncharacterized LOC107058215
sot-r.1	102604840	uncharacterized LOC102604840
sot-r.1	102587481	uncharacterized LOC102587481
cit-r.1	102622069	uncharacterized LOC102622069
cit-r.1	102631197	uncharacterized LOC102631197
nta-r.1	107772630	uncharacterized LOC107772630
nta-r.1	107762420	uncharacterized LOC107762420
nta-r.1	107765290	uncharacterized LOC107765290

Top 50 coexpressed genes to 110429916 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 110429916 (sbi-r.1 coexpression data)

CoexMap"110429916"

[Cytoscape]

Annotation

functional annotation

KEGG

sbi03018 [list] [network] RNA degradation (112 genes)

GO BP

GO:0016567 [list] [network] protein ubiquitination

(412 genes)

IEA

GO CC

GO:0030014 [list] [network] CCR4-NOT complex

(31 genes)

IEA

GO MF

GO:0004842 [list] [network] ubiquitin-protein transferase activity	(328 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1243 genes)	IEA

Protein

XP_021302337.1 [sequence] [blastp]
XP_021302338.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_021302337.1)
nucl 10	(predict for XP_021302338.1)

Subcellular
localization
TargetP

other 9	(predict for XP_021302337.1)
other 9	(predict for XP_021302338.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 110429916	sbi-r.1 for 8059223	zma-u.5 for 100384257	zma-u.5 for 103647171	osa-u.5 for 4351244	osa-u.5 for 4349535	tae-r.2 for 123120563	tae-r.2 for 123111438	tae-r.2 for 123103249	hvu-r.1 for 123398966	bdi-r.1 for 100841785	ath-u.5 for AT2G28540	ath-u.5 for AT3G45630	ath-u.5 for AT5G60170	gma-u.5 for 100796804	gma-u.5 for 100805811	gma-u.5 for 100807521	sly-u.5 for 101252746	sly-u.5 for 101257555	sly-u.5 for 101251877	bra-r.6 for 103864897	bra-r.6 for 103829751	vvi-u.5 for 100267264	vvi-u.5 for 104880937	ppo-u.5 for 7465293	ppo-u.5 for 18100238	ppo-u.5 for 7488143	mtr-u.5 for 11406476	mtr-u.5 for 25484052	mtr-u.5 for 11417361	ghi-r.1 for 121212695	ghi-r.1 for 107959061	ghi-r.1 for 107954061	bna-r.1 for 106446890	bna-r.1 for 125578995	bna-r.1 for 111212893	sot-r.1 for 107058215	sot-r.1 for 102604840	sot-r.1 for 102587481	cit-r.1 for 102622069	cit-r.1 for 102631197	nta-r.1 for 107772630	nta-r.1 for 107762420	nta-r.1 for 107765290

Ortholog

Ortholog ID: 1609

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

uncharacterized LOC110429916

uncharacterized LOC8059223

RNA binding (RRM/RBD/RNP motifs) family protein

uncharacterized LOC100381591

uncharacterized LOC4351244

uncharacterized LOC4349535

uncharacterized LOC123120563

uncharacterized LOC123111438

uncharacterized LOC123103249

uncharacterized LOC123398966

uncharacterized LOC100841785

RNA binding (RRM/RBD/RNP motifs) family protein

uncharacterized LOC100807521

uncharacterized LOC100801880

uncharacterized LOC100780302

endochitinase A-like

uncharacterized LOC101257555

uncharacterized LOC101251877

uncharacterized LOC103864897

general negative regulator of transcription subunit 4

uncharacterized LOC104880937

uncharacterized LOC7465293

uncharacterized LOC18100238

uncharacterized LOC7488143

uncharacterized LOC11406476

uncharacterized LOC25484052

uncharacterized LOC11417361

uncharacterized LOC121212695

uncharacterized LOC107959061

uncharacterized LOC107932928

uncharacterized LOC106446890

uncharacterized LOC106419712

uncharacterized LOC106393111

uncharacterized LOC107058215

uncharacterized LOC102604840

uncharacterized LOC102579257

uncharacterized LOC102622069

uncharacterized LOC102631197

uncharacterized LOC107765290

uncharacterized LOC107824709

uncharacterized LOC107767333

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	2
sbi04120	Ubiquitin mediated proteolysis	2
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	2
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	5
tae03013	Nucleocytoplasmic transport	3
tae03015	mRNA surveillance pathway	3
tae04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	6
tae03013	Nucleocytoplasmic transport	3
tae03015	mRNA surveillance pathway	3
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	5
tae03018	RNA degradation	4
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03250	Viral life cycle - HIV-1	2
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03083	Polycomb repressive complex	3
ath03250	Viral life cycle - HIV-1	3
ath03018	RNA degradation	3
ath03015	mRNA surveillance pathway	3
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	4
ath03015	mRNA surveillance pathway	3
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00970	Aminoacyl-tRNA biosynthesis	4
gma03018	RNA degradation	3
gma00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	3
gma03460	Fanconi anemia pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	3
gma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	2
vvi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	6
ghi03018	RNA degradation	3
ghi00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04136	Autophagy - other	4
ghi03083	Polycomb repressive complex	3
ghi03018	RNA degradation	2
ghi03015	mRNA surveillance pathway	2
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4
bna04075	Plant hormone signal transduction	2
bna04626	Plant-pathogen interaction	2
bna04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	6
bna03015	mRNA surveillance pathway	2
bna04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03022	Basal transcription factors	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2
cit00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04130	SNARE interactions in vesicular transport	2
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4

Expression

Expression pattern

Entrez Gene ID^*

110429916

8059223

100384257

100381591

4351244

4349535

123120563

123111438

123103249

123398966

100841785

817402

823705

836139

100807521

100801880

100780302

101252746

101257555

101251877

103864897

100267264

104880937

7465293

18100238

7488143

11406476

25484052

11417361

121212695

107959061

107932928

106446890

106419712

106393111

107058215

102604840

102579257

102622069

102631197

107765290

107824709

107767333

The preparation time of this page was 0.1 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	2	2	3	1	1	3	3	3	2	2	3	3	3	3	3	2	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 110429916 (sbi-r.1 coexpression data)

Top 50 enrichment test to 110429916 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**