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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   110433451   ribulose-phosphate 3-epimerase, chloroplastic 
 zma-u.5   100274365   Ribulose-phosphate 3-epimerase 
 zma-u.5   100282201   ribulose-phosphate 3-epimerase 
 osa-u.5   4331761   ribulose-phosphate 3-epimerase, chloroplastic-like 
 ath-u.5   RPE   D-ribulose-5-phosphate-3-epimerase 
 gma-u.5   100817791   putative D-ribulose-5-phosphate-3-epimerase 
 gma-u.5   100786514   ribulose-phosphate 3-epimerase, chloroplastic 
 sly-u.5   101264109   ribulose-phosphate 3-epimerase, chloroplastic 
 vvi-u.5   100267206   ribulose-5-phosphate-3-epimerase, chloroplastic 
 ppo-u.5   18105789   ribulose-5-phosphate-3-epimerase, chloroplastic 
 mtr-u.5   25493830   ribulose-phosphate 3-epimerase, chloroplastic 

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Top 50 coexpressed genes to 110433451 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 110433451 (sbi-r.1 coexpression data)

CoexMap"110433451"


sbiLOC110433451 | Entrez gene ID : 110433451    
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 2 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi00030 [list] [network] Pentose phosphate pathway (57 genes)
sbi00040 [list] [network] Pentose and glucuronate interconversions (74 genes)
sbi00710 [list] [network] Carbon fixation by Calvin cycle (77 genes)
sbi01200 [list] [network] Carbon metabolism (264 genes)
sbi01230 [list] [network] Biosynthesis of amino acids (224 genes)
GO BP
GO:0009052 [list] [network] pentose-phosphate shunt, non-oxidative branch  (6 genes)  IEA  
GO:0006098 [list] [network] pentose-phosphate shunt  (22 genes)  IEA  
GO:0005975 [list] [network] carbohydrate metabolic process  (729 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (856 genes)  IEA  
GO MF
GO:0004750 [list] [network] D-ribulose-phosphate 3-epimerase activity  (2 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (2038 genes)  IEA  
Protein XP_021311292.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_021311292.1)
Subcellular
localization
TargetP
chlo 9,  mito 3  (predict for XP_021311292.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
110433451

.
zma-u.5
for
100274365

.
zma-u.5
for
100282201

.
osa-u.5
for
4331761

.
ath-u.5
for
RPE

.
gma-u.5
for
100817791

.
gma-u.5
for
100786514

.
sly-u.5
for
101264109

.
vvi-u.5
for
100267206

.
ppo-u.5
for
18105789

.
mtr-u.5
for
25493830

.


Ortholog ID: 7005
Species ath gma gma sly osa zma zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit nta nta
Symbol RPE LOC100786514 LOC100817791 LOC101264109 LOC4331761 LOC100282201 LOC100274365 LOC103860590 LOC103847037 LOC100267206 LOC18105789 LOC25493830 LOC123093298 LOC123098569 LOC123449548 LOC107953525 LOC121211034 LOC125581642 LOC106380117 CHLRE_12g511900v5 LOC110433451 LOC102594969 LOC102609480 LOC107831470 LOC107818980
Function* D-ribulose-5-phosphate-3-epimerase ribulose-phosphate 3-epimerase, chloroplastic putative D-ribulose-5-phosphate-3-epimerase ribulose-phosphate 3-epimerase, chloroplastic ribulose-phosphate 3-epimerase, chloroplastic-like ribulose-phosphate 3-epimerase Ribulose-phosphate 3-epimerase ribulose-5-phosphate-3-epimerase, chloroplastic ribulose-5-phosphate-3-epimerase, chloroplastic ribulose-5-phosphate-3-epimerase, chloroplastic ribulose-5-phosphate-3-epimerase, chloroplastic ribulose-phosphate 3-epimerase, chloroplastic ribulose-phosphate 3-epimerase, chloroplastic ribulose-phosphate 3-epimerase, chloroplastic ribulose-phosphate 3-epimerase, chloroplastic ribulose-phosphate 3-epimerase, chloroplastic ribulose-5-phosphate-3-epimerase, chloroplastic ribulose-phosphate 3-epimerase, chloroplastic-like ribulose-5-phosphate-3-epimerase, chloroplastic uncharacterized protein ribulose-phosphate 3-epimerase, chloroplastic ribulose-phosphate 3-epimerase, chloroplastic-like ribulose-5-phosphate-3-epimerase, chloroplastic ribulose-phosphate 3-epimerase, chloroplastic ribulose-phosphate 3-epimerase, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 5
ath01200 Carbon metabolism 3
ath00710 Carbon fixation by Calvin cycle 2
ath03060 Protein export 2
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00030 Pentose phosphate pathway 2
gma00040 Pentose and glucuronate interconversions 2
gma00710 Carbon fixation by Calvin cycle 2
gma01200 Carbon metabolism 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 8
gma00630 Glyoxylate and dicarboxylate metabolism 4
gma00710 Carbon fixation by Calvin cycle 4
gma00260 Glycine, serine and threonine metabolism 2
gma00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 6
sly01200 Carbon metabolism 4
sly00710 Carbon fixation by Calvin cycle 3
sly00030 Pentose phosphate pathway 2
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 7
osa00710 Carbon fixation by Calvin cycle 6
osa01230 Biosynthesis of amino acids 5
osa00030 Pentose phosphate pathway 3
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00030 Pentose phosphate pathway 4
zma00710 Carbon fixation by Calvin cycle 4
zma01200 Carbon metabolism 4
zma01230 Biosynthesis of amino acids 4
zma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 5
zma00030 Pentose phosphate pathway 4
zma00710 Carbon fixation by Calvin cycle 4
zma01230 Biosynthesis of amino acids 4
zma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 7
bra01200 Carbon metabolism 6
bra00710 Carbon fixation by Calvin cycle 4
bra01230 Biosynthesis of amino acids 4
bra00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 6
bra01230 Biosynthesis of amino acids 5
bra00260 Glycine, serine and threonine metabolism 3
bra00030 Pentose phosphate pathway 3
bra00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 5
vvi00630 Glyoxylate and dicarboxylate metabolism 3
vvi00710 Carbon fixation by Calvin cycle 2
vvi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 8
ppo00630 Glyoxylate and dicarboxylate metabolism 6
ppo00260 Glycine, serine and threonine metabolism 5
ppo00710 Carbon fixation by Calvin cycle 4
ppo00250 Alanine, aspartate and glutamate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr01200 Carbon metabolism 3
mtr00030 Pentose phosphate pathway 2
mtr00710 Carbon fixation by Calvin cycle 2
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 9
tae01200 Carbon metabolism 9
tae01230 Biosynthesis of amino acids 9
tae00030 Pentose phosphate pathway 6
tae00010 Glycolysis / Gluconeogenesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 4
tae00710 Carbon fixation by Calvin cycle 4
tae01200 Carbon metabolism 4
tae01230 Biosynthesis of amino acids 4
tae04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00710 Carbon fixation by Calvin cycle 4
hvu01200 Carbon metabolism 4
hvu01230 Biosynthesis of amino acids 3
hvu00010 Glycolysis / Gluconeogenesis 2
hvu00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00030 Pentose phosphate pathway 4
ghi00040 Pentose and glucuronate interconversions 4
ghi00710 Carbon fixation by Calvin cycle 4
ghi01200 Carbon metabolism 4
ghi01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00030 Pentose phosphate pathway 4
ghi00040 Pentose and glucuronate interconversions 4
ghi00710 Carbon fixation by Calvin cycle 4
ghi01200 Carbon metabolism 4
ghi01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01200 Carbon metabolism 11
bna00710 Carbon fixation by Calvin cycle 8
bna01230 Biosynthesis of amino acids 7
bna00030 Pentose phosphate pathway 4
bna00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01200 Carbon metabolism 11
bna00260 Glycine, serine and threonine metabolism 7
bna01230 Biosynthesis of amino acids 7
bna00460 Cyanoamino acid metabolism 5
bna00630 Glyoxylate and dicarboxylate metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00710 Carbon fixation by Calvin cycle 5
cre01200 Carbon metabolism 5
cre00500 Starch and sucrose metabolism 4
cre00030 Pentose phosphate pathway 4
cre00520 Amino sugar and nucleotide sugar metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00710 Carbon fixation by Calvin cycle 4
sbi01200 Carbon metabolism 4
sbi00620 Pyruvate metabolism 3
sbi03010 Ribosome 3
sbi00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 7
sot00710 Carbon fixation by Calvin cycle 6
sot01230 Biosynthesis of amino acids 6
sot00010 Glycolysis / Gluconeogenesis 4
sot00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 4
cit00190 Oxidative phosphorylation 3
cit00710 Carbon fixation by Calvin cycle 2
cit01200 Carbon metabolism 2
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 4
nta00195 Photosynthesis 4
nta00040 Pentose and glucuronate interconversions 3
nta00030 Pentose phosphate pathway 2
nta00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 5
nta00190 Oxidative phosphorylation 4
nta00040 Pentose and glucuronate interconversions 3
nta00030 Pentose phosphate pathway 2
nta00710 Carbon fixation by Calvin cycle 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836262 100786514 100817791 101264109 4331761 100282201 100274365 103860590 103847037 100267206 18105789 25493830 123093298 123098569 123449548 107953525 121211034 125581642 106380117 5716597 110433451 102594969 102609480 107831470 107818980
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