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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   110435111   sm-like protein LSM2 
 zma-u.5   100276999   SnRNP core Sm protein Sm-X5-like protein 
 zma-u.5   100286339   snRNP core Sm protein Sm-X5-like protein 
 osa-u.5   4344686   sm-like protein LSM2 
 ath-u.5   LSM2   Small nuclear ribonucleoprotein family protein 
 gma-u.5   100305778   Sm_like superfamily protein 
 gma-u.5   102665888   sm-like protein LSM2 
 sly-u.5   104649355   sm-like protein LSM2 
 sly-u.5   101250608   sm-like protein LSM2 
 ppo-u.5   18098278   sm-like protein LSM2 
 ppo-u.5   7480750   sm-like protein LSM2 
 mtr-u.5   25499092   sm-like protein LSM2 
 mtr-u.5   11442020   sm-like protein LSM2 

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Top 50 coexpressed genes to 110435111 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 110435111 (sbi-r.1 coexpression data)

CoexMap"110435111"


sbiLOC110435111 | Entrez gene ID : 110435111    
Species sbi zma osa ath gma sly ppo mtr bra nta cre vvi cit hvu bdi sot tae bna ghi
Paralog 1 2 1 1 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03018 [list] [network] RNA degradation (112 genes)
sbi03040 [list] [network] Spliceosome (208 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (170 genes)  IEA  
GO CC
GO:1990726 [list] [network] Lsm1-7-Pat1 complex  (6 genes)  IEA  
GO:0005688 [list] [network] U6 snRNP  (9 genes)  IEA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (31 genes)  IEA  
GO:0071011 [list] [network] precatalytic spliceosome  (39 genes)  IEA  
GO:0000932 [list] [network] P-body  (47 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (61 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1243 genes)  IEA  
Protein XP_021316149.1 [sequence] [blastp]
XP_021316150.1 [sequence] [blastp]
XP_021316151.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  cyto_E.R. 4,  extr 1,  chlo 1,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for XP_021316149.1)
cyto 6,  cyto_E.R. 4,  extr 1,  chlo 1,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for XP_021316150.1)
cyto 6,  cyto_E.R. 4,  extr 1,  chlo 1,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for XP_021316151.1)
Subcellular
localization
TargetP
other 6,  scret 4  (predict for XP_021316149.1)
other 6,  scret 4  (predict for XP_021316150.1)
other 6,  scret 4  (predict for XP_021316151.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
110435111

.
zma-u.5
for
100276999

.
zma-u.5
for
100286339

.
osa-u.5
for
4344686

.
ath-u.5
for
LSM2

.
gma-u.5
for
100305778

.
gma-u.5
for
102665888

.
sly-u.5
for
104649355

.
sly-u.5
for
101250608

.
ppo-u.5
for
18098278

.
ppo-u.5
for
7480750

.
mtr-u.5
for
25499092

.
mtr-u.5
for
11442020

.


Ortholog ID: 7431
Species ath gma gma sly sly osa zma zma bra bra ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi
Symbol LSM2 LOC100305778 LOC102665888 LOC101250608 LOC104649355 LOC4344686 LOC100276999 LOC100286339 LOC103844517 LOC103836620 LOC18098278 LOC7480750 LOC11442020 LOC25499092 LOC123160113 LOC123167833 LOC123411046 LOC107949227 LOC121204966 LOC106399363 LOC106399418 CHLRE_10g441950v5 LOC8067850 LOC110435111 LOC102601306 LOC102600939 LOC102628439 LOC100843890
Function* Small nuclear ribonucleoprotein family protein Sm_like superfamily protein sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 SnRNP core Sm protein Sm-X5-like protein snRNP core Sm protein Sm-X5-like protein sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 uncharacterized protein sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 7
ath03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03010 Ribosome 2
gma03018 RNA degradation 2
gma04120 Ubiquitin mediated proteolysis 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma03420 Nucleotide excision repair 3
gma03050 Proteasome 2
gma03018 RNA degradation 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 7
sly03040 Spliceosome 5
sly03018 RNA degradation 3
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
sly03010 Ribosome 5
sly03018 RNA degradation 3
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
osa03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 4
zma03040 Spliceosome 3
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra00190 Oxidative phosphorylation 4
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 7
bra03018 RNA degradation 4
bra03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo03010 Ribosome 3
ppo03050 Proteasome 3
ppo03018 RNA degradation 2
ppo00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 5
ppo03040 Spliceosome 3
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr03018 RNA degradation 3
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 16
tae03018 RNA degradation 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 16
tae03018 RNA degradation 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 8
hvu03018 RNA degradation 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
ghi03010 Ribosome 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
ghi03060 Protein export 3
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03040 Spliceosome 4
bna00541 Biosynthesis of various nucleotide sugars 2
bna01250 Biosynthesis of nucleotide sugars 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03040 Spliceosome 4
bna04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01200 Carbon metabolism 3
sbi01230 Biosynthesis of amino acids 3
sbi03018 RNA degradation 2
sbi03040 Spliceosome 2
sbi00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi03040 Spliceosome 2
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 5
sot00190 Oxidative phosphorylation 3
sot03040 Spliceosome 3
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 5
bdi04016 MAPK signaling pathway - plant 2
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839526 100305778 102665888 101250608 104649355 4344686 100276999 100286339 103844517 103836620 18098278 7480750 11442020 25499092 123160113 123167833 123411046 107949227 121204966 106399363 106399418 5715962 8067850 110435111 102601306 102600939 102628439 100843890
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