Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   110436972   pumilio homolog 5-like 
 zma-u.5   103653177   pumilio homolog 3 
 zma-u.5   100193145   uncharacterized LOC100193145 
 osa-u.5   4346059   pumilio homolog 5 
 osa-u.5   4347460   pumilio homolog 5 
 ath-u.5   PUM5   pumilio 5 
 ath-u.5   PUM6   pumilio 6 
 gma-u.5   100819166   pumilio homolog 6, chloroplastic 
 gma-u.5   100811036   pumilio homolog 6, chloroplastic 
 gma-u.5   100780168   pumilio homolog 6, chloroplastic 
 sly-u.5   101263093   pumilio homolog 5 
 vvi-u.5   100254662   pumilio domain-containing protein PPD1-like 
 ppo-u.5   7490841   pumilio homolog 5 
 ppo-u.5   18111187   pumilio homolog 6, chloroplastic 
 ppo-u.5   18100470   pumilio homolog 6, chloroplastic 
 mtr-u.5   11445389   pumilio homolog 6, chloroplastic 

close


Top 50 coexpressed genes to 110436972 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 110436972 (sbi-r.1 coexpression data)

CoexMap"110436972"


sbiLOC110436972 | Entrez gene ID : 110436972    
Species sbi zma osa ath gma sly vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi cre
Paralog 1 2 2 2 3 1 1 3 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010608 [list] [network] post-transcriptional regulation of gene expression  (120 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (4816 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (267 genes)  IEA  
Protein XP_021320530.1 [sequence] [blastp]
XP_021320531.1 [sequence] [blastp]
XP_021320532.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_021320530.1)
vacu 4,  chlo 3,  extr 1,  nucl 1,  mito 1,  golg 1  (predict for XP_021320531.1)
nucl 7,  cyto 1,  cysk 1  (predict for XP_021320532.1)
Subcellular
localization
TargetP
other 7  (predict for XP_021320530.1)
scret 7,  mito 3  (predict for XP_021320531.1)
other 6  (predict for XP_021320532.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
110436972

.
zma-u.5
for
103653177

.
zma-u.5
for
100193145

.
osa-u.5
for
4346059

.
osa-u.5
for
4347460

.
ath-u.5
for
PUM5

.
ath-u.5
for
PUM6

.
gma-u.5
for
100819166

.
gma-u.5
for
100811036

.
gma-u.5
for
100780168

.
sly-u.5
for
101263093

.
vvi-u.5
for
100254662

.
ppo-u.5
for
7490841

.
ppo-u.5
for
18111187

.
ppo-u.5
for
18100470

.
mtr-u.5
for
11445389

.


Ortholog ID: 3693
Species ath ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna sbi sot cit cit bdi nta nta
Symbol PUM6 PUM5 LOC100811036 LOC100780168 LOC101263093 LOC4347460 LOC4346059 LOC103653177 LOC100193145 LOC103863640 LOC103861595 LOC100254662 LOC7490841 LOC18111187 LOC11445389 LOC123157024 LOC123112488 LOC123399562 LOC123413488 LOC107887110 LOC107910598 LOC125587979 LOC106346520 LOC110436972 LOC102602234 LOC102607004 LOC102621102 LOC100831658 LOC107786023 LOC107827427
Function* pumilio 6 pumilio 5 pumilio homolog 6, chloroplastic pumilio homolog 6, chloroplastic pumilio homolog 5 pumilio homolog 5 pumilio homolog 5 pumilio homolog 3 uncharacterized LOC100193145 pumilio homolog 6, chloroplastic pumilio homolog 6, chloroplastic pumilio domain-containing protein PPD1-like pumilio homolog 5 pumilio homolog 6, chloroplastic pumilio homolog 6, chloroplastic pumilio homolog 5 pumilio homolog 5 pumilio homolog 5-like pumilio homolog 5-like pumilio homolog 5 pumilio homolog 5 pumilio homolog 5-like pumilio homolog 6, chloroplastic-like pumilio homolog 5-like pumilio homolog 5 pumilio homolog 5 pumilio homolog 6, chloroplastic pumilio homolog 5 pumilio homolog 5 pumilio homolog 5
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 7
gma04626 Plant-pathogen interaction 5
gma03018 RNA degradation 2
gma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04136 Autophagy - other 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 7
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 7
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 2
bna04075 Plant hormone signal transduction 2
bna00061 Fatty acid biosynthesis 2
bna00071 Fatty acid degradation 2
bna01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00562 Inositol phosphate metabolism 2
sbi04070 Phosphatidylinositol signaling system 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828694 821569 100811036 100780168 101263093 4347460 4346059 103653177 100193145 103863640 103861595 100254662 7490841 18111187 11445389 123157024 123112488 123399562 123413488 107887110 107910598 125587979 106346520 110436972 102602234 102607004 102621102 100831658 107786023 107827427
The preparation time of this page was 0.1 [sec].