ATTED-II : GeneCoexpression result

Species	Gene	Description
bna-r.1	111200847	cyclin-H1-1-like
bna-r.1	125574906	cyclin-H1-1
bra-r.6	103854664	cyclin-H1-1
bra-r.6	103837174	cyclin-H1-1
ath-u.5	CYCH;1	cyclin H;1
ghi-r.1	107909694	cyclin-H1-1-like
ghi-r.1	107895095	cyclin-H1-1
ghi-r.1	107914476	cyclin-H1-1
cit-r.1	102628605	cyclin-H1-1
gma-u.5	547736	cyclin-H1-1
gma-u.5	100800023	cyclin-H1-1
gma-u.5	100790589	cyclin-H1-1
vvi-u.5	100252789	cyclin-H1-1
ppo-u.5	18098692	cyclin-H1-1
mtr-u.5	11415666	cyclin-H1-1
sly-u.5	101248768	cyclin-H1-1
sly-u.5	101246966	cyclin-H1-1
sot-r.1	102603534	cyclin-H1-1-like
sot-r.1	102594849	cyclin-H1-1-like
nta-r.1	107784183	cyclin-H1-1-like
nta-r.1	107795645	cyclin-H1-1
nta-r.1	107783076	cyclin-H1-1
osa-u.5	4334040	cyclin-H1-1-like
zma-u.5	100283483	uncharacterized LOC100283483
tae-r.2	123091038	cyclin-H1-1
tae-r.2	123086938	cyclin-H1-1
tae-r.2	123096046	cyclin-H1-1
hvu-r.1	123409592	cyclin-H1-1-like
hvu-r.1	123447709	cyclin-H1-1
sbi-r.1	8060506	cyclin-H1-1
bdi-r.1	100830061	cyclin-H1-1
cre-r.1	CHLRE_14g632783v5	uncharacterized protein

Annotation

functional annotation

KEGG

bna03022 [list] [network] Basal transcription factors (161 genes)

bna03420 [list] [network] Nucleotide excision repair (233 genes)

GO BP

GO:0000079 [list] [network] regulation of cyclin-dependent protein serine/threonine kinase activity	(184 genes)	IEA
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II	(1371 genes)	IEA

GO CC

GO:0070985 [list] [network] transcription factor TFIIK complex	(15 genes)	IEA
GO:0005634 [list] [network] nucleus	(9971 genes)	IEA

GO MF

GO:0016538 [list] [network] cyclin-dependent protein serine/threonine kinase regulator activity

(183 genes)

IEA

Protein

XP_022547986.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, mito 2, nucl_plas 2, chlo 1, cyto 1

(predict for XP_022547986.2)

Subcellular
localization
TargetP

other 5, mito 4

(predict for XP_022547986.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 111200847	bna-r.1 for 125574906	bra-r.6 for 103854664	bra-r.6 for 103837174	ath-u.5 for CYCH;1	ghi-r.1 for 107909694	ghi-r.1 for 107895095	ghi-r.1 for 107914476	cit-r.1 for 102628605	gma-u.5 for 547736	gma-u.5 for 100800023	gma-u.5 for 100790589	vvi-u.5 for 100252789	ppo-u.5 for 18098692	mtr-u.5 for 11415666	sly-u.5 for 101248768	sly-u.5 for 101246966	sot-r.1 for 102603534	sot-r.1 for 102594849	nta-r.1 for 107784183	nta-r.1 for 107795645	nta-r.1 for 107783076	osa-u.5 for 4334040	zma-u.5 for 100283483	tae-r.2 for 123091038	tae-r.2 for 123086938	tae-r.2 for 123096046	hvu-r.1 for 123409592	hvu-r.1 for 123447709	sbi-r.1 for 8060506	bdi-r.1 for 100830061	cre-r.1 for CHLRE_14g632783v5

Ortholog

Ortholog ID: 3843

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

CYCH;1

Function^*

cyclin-H1-1-like

cyclin-H1-1

cyclin H;1

cyclin-H1-1

cyclin-H1-1-like

cyclin-H1-1

cyclin-H1-1-like

uncharacterized LOC100283483

cyclin-H1-1

cyclin-H1-1-like

cyclin-H1-1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	3
bna03420	Nucleotide excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	7
bra03420	Nucleotide excision repair	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03022	Basal transcription factors	11
ghi03420	Nucleotide excision repair	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03022	Basal transcription factors	11
ghi03420	Nucleotide excision repair	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03022	Basal transcription factors	11
ghi03420	Nucleotide excision repair	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00340	Histidine metabolism	2
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03022	Basal transcription factors	3
gma03420	Nucleotide excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	2
gma03022	Basal transcription factors	2
gma03420	Nucleotide excision repair	2
gma00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2
ppo03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03420	Nucleotide excision repair	3
mtr00970	Aminoacyl-tRNA biosynthesis	3
mtr03010	Ribosome	3
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03030	DNA replication	7
sly03420	Nucleotide excision repair	3
sly03430	Mismatch repair	2
sly03460	Fanconi anemia pathway	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	2
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2
nta03022	Basal transcription factors	2
nta03420	Nucleotide excision repair	2
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2
zma03040	Spliceosome	2
zma03022	Basal transcription factors	2
zma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	4
tae03018	RNA degradation	3
tae03022	Basal transcription factors	2
tae03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	9
tae03022	Basal transcription factors	2
tae03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	4
hvu03040	Spliceosome	3
hvu03460	Fanconi anemia pathway	2
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00970	Aminoacyl-tRNA biosynthesis	3
sbi03022	Basal transcription factors	2
sbi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	5

Expression

Expression pattern

Entrez Gene ID^*

111200847

103854664

103837174

832824

107895095

107915052

107927309

102628605

547736

100800023

100790589

100252789

18098692

11415666

101248768

101246966

102603534

102594849

107784183

107795645

107783076

4334040

100283483

123091038

123086938

123096046

123409592

123447709

8060506

100830061

5718336

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 111200847 (bna-r.1 coexpression data)

Top 50 enrichment test to 111200847 (bna-r.1 coexpression data)


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	2	2	1	3	1	3	1	1	1	2	2	3	1	1	3	2	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 111200847 (bna-r.1 coexpression data)

Top 50 enrichment test to 111200847 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**