ATTED-II : GeneCoexpression result

Species	Gene	Description
bna-r.1	111204312	structural maintenance of chromosomes protein 5
ath-u.5	SMC5	structural maintenance of chromosomes 5
gma-u.5	100778678	structural maintenance of chromosomes protein 5
vvi-u.5	100249983	structural maintenance of chromosomes protein 5
ppo-u.5	7480063	structural maintenance of chromosomes protein 5
mtr-u.5	11446670	structural maintenance of chromosomes protein 5
mtr-u.5	11409593	structural maintenance of chromosomes protein 5
mtr-u.5	11405711	structural maintenance of chromosomes protein 5
sly-u.5	101255831	structural maintenance of chromosomes protein 5
osa-u.5	4339821	structural maintenance of chromosomes protein 5
zma-u.5	100381612	uncharacterized LOC100381612

functional annotation

KEGG

GO BP

GO:0000724 [list] [network] double-strand break repair via homologous recombination

(307 genes)

IEA

GO CC

GO:0030915 [list] [network] Smc5-Smc6 complex

(19 genes)

IEA

GO MF

GO:0016887 [list] [network] ATP hydrolysis activity	(1360 genes)	IEA
GO:0005524 [list] [network] ATP binding	(5995 genes)	IEA

Protein

XP_022554404.2 [sequence] [blastp]
XP_022554415.2 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, chlo 2, nucl 1, mito 1, cyto_mito 1	(predict for XP_022554404.2)
cyto 5, chlo 2, nucl 1, mito 1, cyto_mito 1	(predict for XP_022554415.2)

Subcellular
localization
TargetP

other 7	(predict for XP_022554404.2)
other 7	(predict for XP_022554415.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 111204312	ath-u.5 for SMC5	gma-u.5 for 100778678	vvi-u.5 for 100249983	ppo-u.5 for 7480063	mtr-u.5 for 11446670	mtr-u.5 for 11409593	mtr-u.5 for 11405711	sly-u.5 for 101255831	osa-u.5 for 4339821	zma-u.5 for 100381612

Ortholog ID: 9661

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

SMC5

Function^*

structural maintenance of chromosomes protein 5

structural maintenance of chromosomes 5

structural maintenance of chromosomes protein 5

structural maintenance of chromosomes protein 5-like

structural maintenance of chromosomes protein 5

uncharacterized LOC100381612

structural maintenance of chromosomes protein 5

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03430	Mismatch repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	3
gma03440	Homologous recombination	2
gma03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03440	Homologous recombination	2
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	3
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	6
mtr03015	mRNA surveillance pathway	3
mtr03020	RNA polymerase	2
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03440	Homologous recombination	4
mtr03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03460	Fanconi anemia pathway	2
sot00270	Cysteine and methionine metabolism	2
sot03440	Homologous recombination	2
sot03030	DNA replication	2
sot03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	4
nta03020	RNA polymerase	2
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	3
osa03450	Non-homologous end-joining	2
osa03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	2
tae03015	mRNA surveillance pathway	2
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2
hvu00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03030	DNA replication	4
bdi03410	Base excision repair	3
bdi03420	Nucleotide excision repair	3
bdi03430	Mismatch repair	3
bdi03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03030	DNA replication	2

Expression

Expression pattern

Entrez Gene ID^*

106433168

111204312

103856172

831449

107920194

121212517

102630865

100778678

100249983

7480063

11446670

11405711

101255831

102605381

107792032

107776932

4339821

100381612

123150131

123183433

123452891

8061639

100836248

5716043

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 111204312 (bna-r.1 coexpression data)

Top 50 enrichment test to 111204312 (bna-r.1 coexpression data)


Species	bna	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	1	1	1	1	1	3	1	1	1	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 111204312 (bna-r.1 coexpression data)

Top 50 enrichment test to 111204312 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**