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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   111205340   cullin-3A 
 bna-r.1   125578669   cullin-3A 
 bna-r.1   125577138   cullin-3A-like 
 bna-r.1   111199820   cullin-3A-like 
 bra-r.6   103835615   cullin-3A 
 bra-r.6   103840654   cullin-3A 
 ath-u.5   CUL3   cullin 3 
 ath-u.5   CUL3B   cullin 3B 
 ghi-r.1   107934903   cullin-3A 
 ghi-r.1   107904068   cullin-3B 
 ghi-r.1   107898717   cullin-3A 
 cit-r.1   102622384   cullin-3A 
 cit-r.1   102630361   cullin-3B-like 
 gma-u.5   100782239   cullin-3A 
 gma-u.5   100795098   cullin-3A 
 vvi-u.5   100254227   cullin-3B-like 
 vvi-u.5   100265464   cullin-3A 
 ppo-u.5   7471494   cullin-3A 
 ppo-u.5   7474232   cullin-3A 
 mtr-u.5   120580095   cullin-3A 
 mtr-u.5   25498104   cullin-3A 
 sly-u.5   101254652   cullin-3A-like 
 sly-u.5   101248999   cullin-3A 
 sot-r.1   102605397   cullin-3A 
 sot-r.1   102586525   cullin-3A-like 
 nta-r.1   107768960   cullin-3A-like 
 nta-r.1   107780807   cullin-3A 
 nta-r.1   107796207   cullin-3A-like 
 osa-u.5   4330720   cullin-3A 
 osa-u.5   4337175   cullin-3B 
 zma-u.5   100384196   Cullin-3B 
 zma-u.5   103627724   cullin-3A 
 zma-u.5   103641219   cullin-3A 
 tae-r.2   123138230   cullin-3A 
 tae-r.2   123128377   cullin-3A 
 hvu-r.1   123428190   cullin-3A-like 
 hvu-r.1   123406208   cullin-3A-like 
 sbi-r.1   8066432   cullin-3A 
 sbi-r.1   8080881   cullin-3A 
 bdi-r.1   100834318   cullin-3A 
 bdi-r.1   100823589   cullin-3A 
 cre-r.1   CHLRE_07g324050v5   uncharacterized protein 

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Top 50 coexpressed genes to 111205340 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 111205340 (bna-r.1 coexpression data)

CoexMap"111205340"


bnaLOC111205340 | Entrez gene ID : 111205340    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 2 3 2 2 2 2 2 2 2 3 2 3 2 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna04120 [list] [network] Ubiquitin mediated proteolysis (476 genes)
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (910 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (1065 genes)  IEA  
GO CC
GO:0031461 [list] [network] cullin-RING ubiquitin ligase complex  (275 genes)  IEA  
GO MF
GO:0031625 [list] [network] ubiquitin protein ligase binding  (118 genes)  IEA  
Protein XP_013725972.1 [sequence] [blastp]
XP_022556725.2 [sequence] [blastp]
XP_022556729.1 [sequence] [blastp]
XP_048614582.1 [sequence] [blastp]
XP_048614583.1 [sequence] [blastp]
XP_048614584.1 [sequence] [blastp]
XP_048614585.1 [sequence] [blastp]
XP_048614586.1 [sequence] [blastp]
XP_048614587.1 [sequence] [blastp]
XP_048614588.1 [sequence] [blastp]
XP_048614589.1 [sequence] [blastp]
XP_048614590.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 9  (predict for XP_013725972.1)
cyto 9  (predict for XP_022556725.2)
cyto 9  (predict for XP_022556729.1)
cyto 9  (predict for XP_048614582.1)
cyto 9  (predict for XP_048614583.1)
cyto 9  (predict for XP_048614584.1)
cyto 9  (predict for XP_048614585.1)
cyto 9  (predict for XP_048614586.1)
cyto 9  (predict for XP_048614587.1)
cyto 9  (predict for XP_048614588.1)
cyto 9  (predict for XP_048614589.1)
cyto 9  (predict for XP_048614590.1)
Subcellular
localization
TargetP
other 6,  mito 4  (predict for XP_013725972.1)
other 6,  mito 4  (predict for XP_022556725.2)
other 6,  mito 4  (predict for XP_022556729.1)
other 6,  mito 4  (predict for XP_048614582.1)
other 6,  mito 4  (predict for XP_048614583.1)
other 6,  mito 4  (predict for XP_048614584.1)
other 6,  mito 4  (predict for XP_048614585.1)
other 6,  mito 4  (predict for XP_048614586.1)
other 6,  mito 4  (predict for XP_048614587.1)
other 6,  mito 4  (predict for XP_048614588.1)
other 6,  mito 4  (predict for XP_048614589.1)
other 6,  mito 4  (predict for XP_048614590.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
111205340
bna-r.1
for
125578669
bna-r.1
for
125577138
bna-r.1
for
111199820
bra-r.6
for
103835615
bra-r.6
for
103840654
ath-u.5
for
CUL3
ath-u.5
for
CUL3B
ghi-r.1
for
107934903
ghi-r.1
for
107904068
ghi-r.1
for
107898717
cit-r.1
for
102622384
cit-r.1
for
102630361
gma-u.5
for
100782239
gma-u.5
for
100795098
vvi-u.5
for
100254227
vvi-u.5
for
100265464
ppo-u.5
for
7471494
ppo-u.5
for
7474232
mtr-u.5
for
120580095
mtr-u.5
for
25498104
sly-u.5
for
101254652
sly-u.5
for
101248999
sot-r.1
for
102605397
sot-r.1
for
102586525
nta-r.1
for
107768960
nta-r.1
for
107780807
nta-r.1
for
107796207
osa-u.5
for
4330720
osa-u.5
for
4337175
zma-u.5
for
100384196
zma-u.5
for
103627724
zma-u.5
for
103641219
tae-r.2
for
123138230
tae-r.2
for
123128377
hvu-r.1
for
123428190
hvu-r.1
for
123406208
sbi-r.1
for
8066432
sbi-r.1
for
8080881
bdi-r.1
for
100834318
bdi-r.1
for
100823589
cre-r.1
for
CHLRE_07g324050v5


Ortholog ID: 2249
Species bna bna bna bra bra ath ath ghi ghi ghi cit cit gma gma vvi vvi ppo ppo mtr mtr mtr sly sly sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC125578669 LOC125577138 LOC111199820 LOC103835615 LOC103840654 CUL3 CUL3B LOC107904068 LOC107898717 LOC107948715 LOC102622384 LOC102630361 LOC100782239 LOC100794520 LOC100254227 LOC100265464 LOC7471494 LOC7474232 LOC11410449 LOC25495298 LOC25495296 LOC101254652 LOC101248999 LOC102605397 LOC102586525 LOC107768960 LOC107780807 LOC107814473 LOC4337175 LOC4344771 LOC100384196 LOC103627724 LOC103641219 LOC123128377 LOC123190820 LOC123145491 LOC123428190 LOC123406208 LOC8066432 LOC8080881 LOC100834318 LOC100823589 CHLRE_07g324050v5
Function* cullin-3A cullin-3A-like cullin-3A-like cullin-3A cullin-3A cullin 3 cullin 3B cullin-3B cullin-3A cullin-3A cullin-3A cullin-3B-like cullin-3A cullin-3A cullin-3B-like cullin-3A cullin-3A cullin-3A cullin-3A cullin-3A cullin-3A cullin-3A-like cullin-3A cullin-3A cullin-3A-like cullin-3A-like cullin-3A cullin-3A-like cullin-3B cullin-3A Cullin-3B cullin-3A cullin-3A cullin-3A cullin-3A cullin-3A cullin-3A-like cullin-3A-like cullin-3A cullin-3A cullin-3A cullin-3A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 6
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 6
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 6
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 5
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 5
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 5
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 4
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04075 Plant hormone signal transduction 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04626 Plant-pathogen interaction 2
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
mtr03082 ATP-dependent chromatin remodeling 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly04141 Protein processing in endoplasmic reticulum 2
sly03018 RNA degradation 2
sly03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 6
nta03022 Basal transcription factors 5
nta04141 Protein processing in endoplasmic reticulum 4
nta03420 Nucleotide excision repair 3
nta02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 6
nta04141 Protein processing in endoplasmic reticulum 4
nta03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 6
nta04141 Protein processing in endoplasmic reticulum 4
nta03022 Basal transcription factors 4
nta03250 Viral life cycle - HIV-1 2
nta03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03022 Basal transcription factors 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00730 Thiamine metabolism 3
tae01240 Biosynthesis of cofactors 3
tae04120 Ubiquitin mediated proteolysis 3
tae04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04148 Efferocytosis 4
tae04120 Ubiquitin mediated proteolysis 3
tae03060 Protein export 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 4
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 3
sbi03040 Spliceosome 3
sbi03018 RNA degradation 2
sbi00860 Porphyrin metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 4
bdi04120 Ubiquitin mediated proteolysis 2
bdi04141 Protein processing in endoplasmic reticulum 2
bdi00020 Citrate cycle (TCA cycle) 2
bdi00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 125578669 125577138 111199820 103835615 103840654 839226 843303 107904068 107898717 107948715 102622384 102630361 100782239 100794520 100254227 100265464 7471494 7474232 11410449 25495298 25495296 101254652 101248999 102605397 102586525 107768960 107780807 107814473 4337175 4344771 100384196 103627724 103641219 123128377 123190820 123145491 123428190 123406208 8066432 8080881 100834318 100823589 5726613
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