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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100284536   surfeit locus protein 5 
 sbi-r.1   8061360   mediator of RNA polymerase II transcription subunit 22a 
 sbi-r.1   8062122   mediator of RNA polymerase II transcription subunit 22a 
 osa-u.5   4325800   mediator of RNA polymerase II transcription subunit 22a 
 osa-u.5   4345849   mediator of RNA polymerase II transcription subunit 22a 
 tae-r.2   123059910   mediator of RNA polymerase II transcription subunit 22a 
 tae-r.2   123068391   mediator of RNA polymerase II transcription subunit 22a 
 tae-r.2   123076936   mediator of RNA polymerase II transcription subunit 22a 
 hvu-r.1   123442548   mediator of RNA polymerase II transcription subunit 22a-like 
 bdi-r.1   100823677   mediator of RNA polymerase II transcription subunit 22a 
 ath-u.5   MED22B   Surfeit locus protein 5 subunit 22 of Mediator complex 
 ath-u.5   AT1G16430   Surfeit locus protein 5 subunit 22 of Mediator complex 
 gma-u.5   100807971   mediator of RNA polymerase II transcription subunit 22a 
 gma-u.5   100787657   mediator of RNA polymerase II transcription subunit 22a 
 sly-u.5   101257248   mediator of RNA polymerase II transcription subunit 22a 
 bra-r.6   103872434   mediator of RNA polymerase II transcription subunit 22b 
 vvi-u.5   100253502   mediator of RNA polymerase II transcription subunit 22a 
 ppo-u.5   7462133   mediator of RNA polymerase II transcription subunit 22a 
 mtr-u.5   11446732   mediator of RNA polymerase II transcription subunit 22a 
 ghi-r.1   107910490   mediator of RNA polymerase II transcription subunit 22b 
 ghi-r.1   107951581   mediator of RNA polymerase II transcription subunit 22b 
 bna-r.1   106346770   mediator of RNA polymerase II transcription subunit 22b-like 
 bna-r.1   106367456   mediator of RNA polymerase II transcription subunit 22b 
 sot-r.1   102603738   mediator of RNA polymerase II transcription subunit 22a-like 
 cit-r.1   102609763   mediator of RNA polymerase II transcription subunit 22b 
 nta-r.1   107822383   mediator of RNA polymerase II transcription subunit 22a-like 
 nta-r.1   107771518   mediator of RNA polymerase II transcription subunit 22a 
 cre-r.1   CHLRE_07g349450v5   uncharacterized protein 

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Top 50 coexpressed genes to 100284536 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100284536 (zma-u.5 coexpression data)

CoexMap"111589270"


zmaLOC111589270 | Entrez gene ID : 111589270    
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 2 2 3 1 1 2 2 1 1 1 1 1 2 2 1 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (427 genes)  IEA  
GO CC
GO:0016592 [list] [network] mediator complex  (45 genes)  IEA  
GO MF
GO:0003712 [list] [network] transcription coregulator activity  (148 genes)  IEA  
Protein XP_023155831.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  extr 4  (predict for XP_023155831.1)
Subcellular
localization
TargetP
chlo 5,  other 3  (predict for XP_023155831.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100284536
sbi-r.1
for
8061360
sbi-r.1
for
8062122
osa-u.5
for
4325800
osa-u.5
for
4345849
tae-r.2
for
123059910
tae-r.2
for
123068391
tae-r.2
for
123076936
hvu-r.1
for
123442548
bdi-r.1
for
100823677
ath-u.5
for
MED22B
ath-u.5
for
AT1G16430
gma-u.5
for
100807971
gma-u.5
for
100787657
sly-u.5
for
101257248
bra-r.6
for
103872434
vvi-u.5
for
100253502
ppo-u.5
for
7462133
mtr-u.5
for
11446732
ghi-r.1
for
107910490
ghi-r.1
for
107951581
bna-r.1
for
106346770
bna-r.1
for
106367456
sot-r.1
for
102603738
cit-r.1
for
102609763
nta-r.1
for
107822383
nta-r.1
for
107771518
cre-r.1
for
CHLRE_07g349450v5


Ortholog ID: 8222
Species zma sbi sbi osa osa tae tae tae hvu bdi ath ath gma gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta cre
Symbol LOC100284536 LOC8061360 LOC8062122 LOC4325800 LOC4345849 LOC123059910 LOC123068391 LOC123076936 LOC123442548 LOC100823677 MED22B AT1G16430 LOC100807971 LOC100787657 LOC101257248 LOC103872434 LOC100253502 LOC7462133 LOC11446732 LOC107910490 LOC107951581 LOC106346770 LOC106367456 LOC102603738 LOC102609763 LOC107822383 LOC107771518 CHLRE_07g349450v5
Function* surfeit locus protein 5 mediator of RNA polymerase II transcription subunit 22a mediator of RNA polymerase II transcription subunit 22a mediator of RNA polymerase II transcription subunit 22a mediator of RNA polymerase II transcription subunit 22a mediator of RNA polymerase II transcription subunit 22a mediator of RNA polymerase II transcription subunit 22a mediator of RNA polymerase II transcription subunit 22a mediator of RNA polymerase II transcription subunit 22a-like mediator of RNA polymerase II transcription subunit 22a Surfeit locus protein 5 subunit 22 of Mediator complex Surfeit locus protein 5 subunit 22 of Mediator complex mediator of RNA polymerase II transcription subunit 22a mediator of RNA polymerase II transcription subunit 22a mediator of RNA polymerase II transcription subunit 22a mediator of RNA polymerase II transcription subunit 22b mediator of RNA polymerase II transcription subunit 22a mediator of RNA polymerase II transcription subunit 22a mediator of RNA polymerase II transcription subunit 22a mediator of RNA polymerase II transcription subunit 22b mediator of RNA polymerase II transcription subunit 22b mediator of RNA polymerase II transcription subunit 22b-like mediator of RNA polymerase II transcription subunit 22b mediator of RNA polymerase II transcription subunit 22a-like mediator of RNA polymerase II transcription subunit 22b mediator of RNA polymerase II transcription subunit 22a-like mediator of RNA polymerase II transcription subunit 22a uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae03008 Ribosome biogenesis in eukaryotes 4
tae03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 5
tae00310 Lysine degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00510 N-Glycan biosynthesis 2
hvu00513 Various types of N-glycan biosynthesis 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03060 Protein export 2
ath00230 Purine metabolism 2
ath00240 Pyrimidine metabolism 2
ath01232 Nucleotide metabolism 2
ath04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 12
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma03040 Spliceosome 5
gma03018 RNA degradation 2
gma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 6
bra03010 Ribosome 3
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo00740 Riboflavin metabolism 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 6
ghi04144 Endocytosis 2
ghi04075 Plant hormone signal transduction 2
ghi04626 Plant-pathogen interaction 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 6
ghi04144 Endocytosis 2
ghi04075 Plant hormone signal transduction 2
ghi04626 Plant-pathogen interaction 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 11
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 8
bna03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100284536 8061360 8062122 4325800 4345849 123059910 123068391 123076936 123442548 100823677 837310 838213 100807971 100787657 101257248 103872434 100253502 7462133 11446732 107910490 107951581 106346770 106367456 102603738 102609763 107822383 107771518 5718169
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