ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7463818	ras-related protein RABA1d
ppo-u.5	18104558	ras-related protein RABA1f
ppo-u.5	7487576	ras-related protein RABA1f
gma-u.5	100305599	uncharacterized LOC100305599
gma-u.5	100805995	ras-related protein RABA1f
gma-u.5	100810759	ras-related protein RABA1b-like
mtr-u.5	11416438	ras-related protein RABA1b
mtr-u.5	11408702	ras-related protein Rab11D
mtr-u.5	11414120	ras-related protein RABA1f
ath-u.5	RABA1f	RAB GTPase homolog A1F
ath-u.5	RABA1b	RAB GTPase homolog A1B
ath-u.5	ARA-2	Ras-related small GTP-binding family protein
vvi-u.5	100252396	ras-related protein Rab11B-like
vvi-u.5	100249712	ras-related protein RABA1d
ghi-r.1	107939203	ras-related protein Rab11B
ghi-r.1	107925272	ras-related protein RABA1c
bna-r.1	106444377	ras-related protein RABA1e
bna-r.1	125602411	ras-related protein RABA1d-like
cit-r.1	102618870	ras-related protein RABA1f-like
cit-r.1	102627602	ras-related protein RABA1d
cit-r.1	102626353	ras-related protein RABA1f
sly-u.5	Rab11a	Rab11 GTPase
sly-u.5	101252329	ras-related protein RABA1f-like
sly-u.5	101254053	ras-related protein RABA1d
sot-r.1	102603516	ras-related protein RABA1f
sot-r.1	102599414	ras-related protein RABA1d
nta-r.1	107812322	ras-related protein Rab11B
nta-r.1	107799657	ras-related protein RABA1f
nta-r.1	107821633	ras-related protein YPT3
osa-u.5	4341266	ras-related protein RIC2-like
osa-u.5	4339623	ras-related protein RABA1f
osa-u.5	4326321	ras-related protein RABA1f
zma-u.5	100283582	uncharacterized LOC100283582
zma-u.5	100281941	uncharacterized LOC100281941
zma-u.5	100272710	Ras-related protein RABA1f
tae-r.2	123062057	ras-related protein RIC2
tae-r.2	123068346	ras-related protein RABA1f
tae-r.2	123070313	ras-related protein RABA1f
hvu-r.1	123450422	ras-related protein RABA1f-like
hvu-r.1	123444410	ras-related protein RIC2-like
hvu-r.1	123444060	ras-related protein RABA1f-like
sbi-r.1	8067717	ras-related protein RABA1f
sbi-r.1	8080822	ras-related protein RABA1f
sbi-r.1	8082978	ras-related protein RIC2
bdi-r.1	100824781	ras-related protein RIC2
bdi-r.1	100826678	ras-related protein RABA1f
bdi-r.1	100846914	ras-related protein RABA1f

Top 50 coexpressed genes to 7463818 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7463818 (ppo-u.5 coexpression data)

CoexMap"112323346"

[Cytoscape]

Annotation

functional annotation

KEGG

pop04144 [list] [network] Endocytosis (195 genes)

GO BP

GO CC

GO:0005768 [list] [network] endosome

(204 genes)

IEA

GO MF

GO:0003924 [list] [network] GTPase activity	(264 genes)	IEA
GO:0005525 [list] [network] GTP binding	(290 genes)	IEA

Protein

XP_024436875.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, chlo 3, cyto_pero 3, cyto_E.R. 3, cyto_plas 3

(predict for XP_024436875.1)

Subcellular
localization
TargetP

other 8

(predict for XP_024436875.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7463818	ppo-u.5 for 18104558	ppo-u.5 for 7487576	gma-u.5 for 100305599	gma-u.5 for 100805995	gma-u.5 for 100810759	mtr-u.5 for 11416438	mtr-u.5 for 11408702	mtr-u.5 for 11414120	ath-u.5 for RABA1f	ath-u.5 for RABA1b	ath-u.5 for ARA-2	vvi-u.5 for 100252396	vvi-u.5 for 100249712	ghi-r.1 for 107939203	ghi-r.1 for 107925272	bna-r.1 for 106444377	bna-r.1 for 125602411	cit-r.1 for 102618870	cit-r.1 for 102627602	cit-r.1 for 102626353	sly-u.5 for Rab11a	sly-u.5 for 101252329	sly-u.5 for 101254053	sot-r.1 for 102603516	sot-r.1 for 102599414	nta-r.1 for 107812322	nta-r.1 for 107799657	nta-r.1 for 107821633	osa-u.5 for 4341266	osa-u.5 for 4339623	osa-u.5 for 4326321	zma-u.5 for 100283582	zma-u.5 for 100281941	zma-u.5 for 100272710	tae-r.2 for 123062057	tae-r.2 for 123068346	tae-r.2 for 123070313	hvu-r.1 for 123450422	hvu-r.1 for 123444410	hvu-r.1 for 123444060	sbi-r.1 for 8067717	sbi-r.1 for 8080822	sbi-r.1 for 8082978	bdi-r.1 for 100824781	bdi-r.1 for 100826678	bdi-r.1 for 100846914

Ortholog

Ortholog ID: 267

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

ARA-2

RABA1c

Rab11a

Function^*

ras-related protein RABA1f

ras-related protein RABA1d

ras-related protein RABA1b-like

rab GTPase family 11 protein

Rab GTPase family 11-like protein

ras-related protein Rab11D

ras-related protein RABA1f

Ras-related small GTP-binding family protein

RAB GTPase homolog A1C

ras-related protein RABA1b

ras-related protein RABA1e

ras-related protein RABA1d

ras-related protein RABA1f

ras-related protein RABA1c

ras-related protein RABA1b-like

ras-related protein RABA1a

ras-related protein RABA1d

ras-related protein RABA1f

ras-related protein Rab11D

Rab11 GTPase

ras-related protein Rab11B

ras-related protein RABA1f

ras-related protein YPT3

ras-related protein RABA1d

ras-related protein RIC2-like

ras-related protein RABA1f

Ras protein RIC2

uncharacterized LOC100381498

Ras-related protein RABA1f

ras-related protein RABA1f

ras-related protein RIC2

ras-related protein RABA1f-like

ras-related protein RIC2

ras-related protein RABA1f

ras-related protein RIC2

ras-related protein RABA1f

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03050	Proteasome	5
ppo03013	Nucleocytoplasmic transport	2
ppo03015	mRNA surveillance pathway	2
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	4
ppo00190	Oxidative phosphorylation	4
ppo04626	Plant-pathogen interaction	3
ppo04016	MAPK signaling pathway - plant	2
ppo04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04814	Motor proteins	3
gma04144	Endocytosis	2
gma04820	Cytoskeleton in muscle cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	4
gma04144	Endocytosis	3
gma03008	Ribosome biogenesis in eukaryotes	3
gma03013	Nucleocytoplasmic transport	3
gma03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04145	Phagosome	5
gma04517	IgSF CAM signaling	5
gma04814	Motor proteins	5
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	2
mtr03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	7
mtr00510	N-Glycan biosynthesis	3
mtr00513	Various types of N-glycan biosynthesis	3
mtr04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	4
mtr04144	Endocytosis	2
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	3
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	4
ath04517	IgSF CAM signaling	2
ath05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04145	Phagosome	3
bra04517	IgSF CAM signaling	3
bra04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00030	Pentose phosphate pathway	3
bra01200	Carbon metabolism	3
bra00195	Photosynthesis	2
bra00710	Carbon fixation by Calvin cycle	2
bra01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	4
vvi03010	Ribosome	2
vvi03013	Nucleocytoplasmic transport	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01250	Biosynthesis of nucleotide sugars	3
vvi00520	Amino sugar and nucleotide sugar metabolism	2
vvi00541	Biosynthesis of various nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	10
ghi04145	Phagosome	2
ghi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	8
ghi00999	Biosynthesis of various plant secondary metabolites	2
ghi04145	Phagosome	2
ghi04148	Efferocytosis	2
ghi04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	8
ghi04145	Phagosome	2
ghi04148	Efferocytosis	2
ghi04517	IgSF CAM signaling	2
ghi04518	Integrin signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04145	Phagosome	4
bna04148	Efferocytosis	4
bna04517	IgSF CAM signaling	4
bna04518	Integrin signaling	4
bna04620	Toll-like receptor signaling pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00600	Sphingolipid metabolism	2
bna04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04144	Endocytosis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	2
cit04814	Motor proteins	2
cit00541	Biosynthesis of various nucleotide sugars	2
cit01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	6
cit04144	Endocytosis	2
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04145	Phagosome	4
sly04517	IgSF CAM signaling	4
sly04814	Motor proteins	4
sly00670	One carbon pool by folate	4
sly01230	Biosynthesis of amino acids	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01240	Biosynthesis of cofactors	5
sot04145	Phagosome	5
sot04517	IgSF CAM signaling	5
sot04814	Motor proteins	5
sot00270	Cysteine and methionine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6
nta03050	Proteasome	5
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2
nta00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	3
nta04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03440	Homologous recombination	2
osa03018	RNA degradation	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	4
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04626	Plant-pathogen interaction	5
zma04016	MAPK signaling pathway - plant	4
zma04070	Phosphatidylinositol signaling system	4
zma04075	Plant hormone signal transduction	4
zma03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	4
tae04144	Endocytosis	3
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	3
tae03018	RNA degradation	3
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	3
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2
hvu04145	Phagosome	2
hvu00520	Amino sugar and nucleotide sugar metabolism	2
hvu01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03060	Protein export	3
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	8
sbi00240	Pyrimidine metabolism	2
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	9
sbi00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	6
sbi00520	Amino sugar and nucleotide sugar metabolism	2
sbi01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	5
bdi00520	Amino sugar and nucleotide sugar metabolism	2
bdi01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	7

Expression

Expression pattern

Entrez Gene ID^*

7487576

7476322

100810759

100527366

100306448

11408702

11446076

25493057

837151

834614

103842822

103860992

100249712

100264083

107918341

107909644

107901705

106416150

106420232

106431767

102627602

102621472

102623792

543749

101256455

101257485

102591005

102579756

107821633

107828745

4341266

4324623

4346744

100194331

100381498

100193085

123183114

123145996

123079171

123450422

123408149

123407638

8067717

8082978

8063601

100826678

100846914

100823622

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	mtr	ath	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre	bra
Paralog	3	3	3	3	2	2	2	3	3	2	3	3	3	3	3	3	3	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7463818 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7463818 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**