ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	113000769	HMG1/2-like protein
gma-r.7	113000769	HMG1/2-like protein
gma-u.5	100820624	high mobility group B protein 14
gma-u.5	100819349	FACT complex subunit SSRP1
mtr-u.5	25485684	high mobility group B protein 7
mtr-u.5	11405962	high mobility group B protein 1
mtr-u.5	11407325	HMG1/2-like protein
ppo-u.5	7462998	high mobility group B protein 14
ppo-u.5	7474442	high mobility group B protein 1
ppo-u.5	7488016	high mobility group B protein 1
ath-u.5	AT5G23405	HMG-box (high mobility group) DNA-binding family protein
ath-u.5	HMGB3	high mobility group B3
ath-u.5	HMGB2	high mobility group B2
bra-r.6	103865488	high mobility group B protein 7
bra-r.6	103829416	high mobility group B protein 3
vvi-u.5	100246802	high mobility group B protein 1-like
vvi-u.5	100264012	high mobility group B protein 14
vvi-u.5	100257544	high mobility group B2 protein-like
ghi-r.1	107939996	high mobility group B protein 3
ghi-r.1	107942274	high mobility group B protein 7
ghi-r.1	107943652	high mobility group B protein 1
bna-r.1	111215313	high mobility group B protein 4-like
bna-r.1	106404571	high mobility group B protein 7
bna-r.1	125608301	high mobility group B protein 14-like
cit-r.1	HMG	group B HMG-box protein
cit-r.1	102627764	high mobility group B protein 1-like
sly-u.5	101247480	high mobility group B protein 14
sly-u.5	101257131	HMG1/2-like protein
sly-u.5	101247954	high mobility group B protein 1
sot-r.1	102594501	HMG1/2-like protein
nta-r.1	107828168	high mobility group B protein 14
nta-r.1	107812199	high mobility group B protein 14-like
nta-r.1	107808275	HMG1/2-like protein
osa-u.5	4336676	DNA-binding protein MNB1B
osa-u.5	4347789	HMG1/2-like protein
osa-u.5	4330271	HMG1/2-like protein
zma-u.5	541952	nucleosome/chromatin assembly factor D
zma-u.5	541987	nucleosome/chromatin assembly factor D
zma-u.5	542455	high mobility group protein 3
tae-r.2	123113020	HMG1/2-like protein
tae-r.2	123104735	HMG1/2-like protein
tae-r.2	123080756	high mobility group B protein 4
hvu-r.1	123397883	HMG1/2-like protein
hvu-r.1	123410844	high mobility group B protein 7-like
hvu-r.1	123402298	DNA-binding protein MNB1B-like
sbi-r.1	110436389	HMG1/2-like protein
sbi-r.1	110431028	DNA-binding protein MNB1B
sbi-r.1	110432329	HMG1/2-like protein
bdi-r.1	100821521	high mobility group B protein 7
bdi-r.1	100825064	DNA-binding protein MNB1B
bdi-r.1	100829543	HMG1/2-like protein
cre-r.1	CHLRE_16g672300v5	uncharacterized protein
cre-r.1	CHLRE_11g480950v5	uncharacterized protein
cre-r.1	CHLRE_06g261450v5	uncharacterized protein

Top 50 coexpressed genes to 113000769 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 113000769 (gma-u.5 coexpression data)

CoexMap"113000769"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_025983309.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 10

(predict for XP_025983309.2)

Subcellular
localization
TargetP

other 8

(predict for XP_025983309.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 113000769	gma-r.7 for 113000769	gma-u.5 for 100820624	gma-u.5 for 100819349	mtr-u.5 for 25485684	mtr-u.5 for 11405962	mtr-u.5 for 11407325	ppo-u.5 for 7462998	ppo-u.5 for 7474442	ppo-u.5 for 7488016	ath-u.5 for AT5G23405	ath-u.5 for HMGB3	ath-u.5 for HMGB2	bra-r.6 for 103865488	bra-r.6 for 103829416	vvi-u.5 for 100246802	vvi-u.5 for 100264012	vvi-u.5 for 100257544	ghi-r.1 for 107939996	ghi-r.1 for 107942274	ghi-r.1 for 107943652	bna-r.1 for 111215313	bna-r.1 for 106404571	bna-r.1 for 125608301	cit-r.1 for HMG	cit-r.1 for 102627764	sly-u.5 for 101247480	sly-u.5 for 101257131	sly-u.5 for 101247954	sot-r.1 for 102594501	nta-r.1 for 107828168	nta-r.1 for 107812199	nta-r.1 for 107808275	osa-u.5 for 4336676	osa-u.5 for 4347789	osa-u.5 for 4330271	zma-u.5 for 541952	zma-u.5 for 541987	zma-u.5 for 542455	tae-r.2 for 123113020	tae-r.2 for 123104735	tae-r.2 for 123080756	hvu-r.1 for 123397883	hvu-r.1 for 123410844	hvu-r.1 for 123402298	sbi-r.1 for 110436389	sbi-r.1 for 110431028	sbi-r.1 for 110432329	bdi-r.1 for 100821521	bdi-r.1 for 100825064	bdi-r.1 for 100829543	cre-r.1 for CHLRE_16g672300v5	cre-r.1 for CHLRE_11g480950v5	cre-r.1 for CHLRE_06g261450v5

Ortholog

Ortholog ID: 226

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

HMGB3

HMGB2

HMGB5

HMG

Function^*

uncharacterized LOC100305961

uncharacterized LOC100305957

uncharacterized LOC100499992

high mobility group B protein 7

high mobility group B protein 1

uncharacterized LOC25481021

high mobility group B protein 1

high mobility group B protein 3

high mobility group B3

high mobility group B2

high mobility group B5

high mobility group B protein 4

high mobility group B protein 7

high mobility group B protein 1-like

high mobility group B2 protein-like

high mobility group B protein 7

high mobility group B protein 1

high mobility group B protein 3

high mobility group B protein 1

high mobility group B protein 3-like

high mobility group B protein 4

high mobility group B protein 2

group B HMG-box protein

high mobility group B protein 4

high mobility group B protein 3

HMG1/2-like protein

high mobility group B protein 1

high mobility group B protein 7

high mobility group B protein 7-like

HMG1/2-like protein

high mobility group B protein 7

DNA-binding protein MNB1B

HMG1/2-like protein

high mobility group B protein 7

nucleosome/chromatin assembly factor D

HMG1/2-like protein

high mobility group B protein 4

DNA-binding protein MNB1B

HMG1/2-like protein

high mobility group B protein 7-like

DNA-binding protein MNB1B-like

high mobility group B protein 14

HMG1/2-like protein

DNA-binding protein MNB1B

HMG1/2-like protein

high mobility group B protein 7

HMG1/2-like protein

DNA-binding protein MNB1B

uncharacterized protein

Coexmap

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Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	7
gma03018	RNA degradation	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03020	RNA polymerase	2
mtr03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04712	Circadian rhythm - plant	2
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	5
ath03020	RNA polymerase	4
ath03420	Nucleotide excision repair	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03030	DNA replication	5
bra03430	Mismatch repair	3
bra03420	Nucleotide excision repair	2
bra03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	2
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03082	ATP-dependent chromatin remodeling	3
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03082	ATP-dependent chromatin remodeling	2
vvi00240	Pyrimidine metabolism	2
vvi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00071	Fatty acid degradation	4
ghi01212	Fatty acid metabolism	4
ghi04146	Peroxisome	4
ghi00061	Fatty acid biosynthesis	2
ghi00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	6
ghi00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	11
bna03030	DNA replication	2
bna03410	Base excision repair	2
bna03450	Non-homologous end-joining	2
bna00240	Pyrimidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	4
sly03040	Spliceosome	4
sly04141	Protein processing in endoplasmic reticulum	3
sly03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00010	Glycolysis / Gluconeogenesis	2
nta00260	Glycine, serine and threonine metabolism	2
nta01200	Carbon metabolism	2
nta01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	3
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2
nta03030	DNA replication	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	7
osa03010	Ribosome	6
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	6
osa03040	Spliceosome	4
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03030	DNA replication	10
osa03440	Homologous recombination	3
osa03420	Nucleotide excision repair	3
osa03430	Mismatch repair	2
osa03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03030	DNA replication	6
zma03420	Nucleotide excision repair	3
zma03430	Mismatch repair	3
zma03440	Homologous recombination	2
zma03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	6
zma03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00500	Starch and sucrose metabolism	8
zma00520	Amino sugar and nucleotide sugar metabolism	3
zma01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	4
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00380	Tryptophan metabolism	3
tae00630	Glyoxylate and dicarboxylate metabolism	3
tae01200	Carbon metabolism	3
tae04016	MAPK signaling pathway - plant	3
tae04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03022	Basal transcription factors	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03030	DNA replication	5
bdi03082	ATP-dependent chromatin remodeling	4
bdi03440	Homologous recombination	2
bdi03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	4
bdi03030	DNA replication	4
bdi03440	Homologous recombination	2
bdi03460	Fanconi anemia pathway	2
bdi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03030	DNA replication	3
cre03410	Base excision repair	2
cre03420	Nucleotide excision repair	2
cre03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03030	DNA replication	4
cre03410	Base excision repair	2
cre03420	Nucleotide excision repair	2
cre03430	Mismatch repair	2
cre00510	N-Glycan biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

100305961

100305957

100499992

25485684

11405962

25481021

7474442

7488016

7494705

838659

838658

829709

103845936

103854899

100246802

100257544

100247584

107920412

107922191

107890968

111197968

106345995

106416143

102577961

102630695

102619973

101257131

101247954

101247008

102599000

102583623

107808275

107781188

107760218

4336676

4330271

4344416

541952

541987

109944069

123080756

780567

123172882

123410844

123402298

123444045

110436389

110431028

110432329

100821521

100829543

100838667

5721401

5722933

5722029

The preparation time of this page was 0.2 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	2	3	3	3	2	3	1	3	3	3	3	3	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 113000769 (gma-u.5 coexpression data)

Top 50 enrichment test to 113000769 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**