ATTED-II : GeneCoexpression result

Species	Gene	Description
mtr-u.5	11407370	sm-like protein LSM7
mtr-r.5	11407370	sm-like protein LSM7
mtr-m.5	11407370	sm-like protein LSM7
mtr-u.5	25501029	sm-like protein LSM7
gma-u.5	100807381	sm-like protein LSM7
gma-u.5	100306498	uncharacterized LOC100306498
ppo-u.5	7481998	sm-like protein LSM7
ppo-u.5	7480092	sm-like protein LSM7
ath-u.5	EMB2816	Small nuclear ribonucleoprotein family protein
vvi-u.5	100855332	sm-like protein LSM7
sly-u.5	101258986	sm-like protein LSM7
osa-u.5	4344803	sm-like protein LSM7
zma-u.5	100282349	LSM7-like
zma-u.5	100285982	LSM7-like

functional annotation

KEGG

mtr03018 [list] [network] RNA degradation (117 genes)

mtr03040 [list] [network] Spliceosome (435 genes)

GO BP

GO:0000956 [list] [network] nuclear-transcribed mRNA catabolic process	(58 genes)	IEA
GO:0000398 [list] [network] mRNA splicing, via spliceosome	(155 genes)	IEA

GO CC

GO:0005688 [list] [network] U6 snRNP	(7 genes)	IEA
GO:1990726 [list] [network] Lsm1-7-Pat1 complex	(7 genes)	IEA
GO:0005689 [list] [network] U12-type spliceosomal complex	(8 genes)	IEA
GO:0071004 [list] [network] U2-type prespliceosome	(13 genes)	IEA
GO:0097526 [list] [network] spliceosomal tri-snRNP complex	(29 genes)	IEA
GO:0071013 [list] [network] catalytic step 2 spliceosome	(54 genes)	IEA

GO MF

GO:0003723 [list] [network] RNA binding

(1400 genes)

IEA

Protein

XP_003623155.2 [sequence] [blastp]

Subcellular
localization
wolf

extr 3, chlo 2, nucl 1, mito 1, cyto 1, plas 1, vacu 1, cyto_mito 1, cysk_nucl 1, cyto_plas 1

(predict for XP_003623155.2)

Subcellular
localization
TargetP

other 8

(predict for XP_003623155.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11407370	mtr-r.5 for 11407370	mtr-m.5 for 11407370	mtr-u.5 for 25501029	gma-u.5 for 100807381	gma-u.5 for 100306498	ppo-u.5 for 7481998	ppo-u.5 for 7480092	ath-u.5 for EMB2816	vvi-u.5 for 100855332	sly-u.5 for 101258986	osa-u.5 for 4344803	zma-u.5 for 100282349	zma-u.5 for 100285982

Ortholog ID: 5255

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

EMB2816

Function^*

sm-like protein LSM7

uncharacterized LOC100306498

sm-like protein LSM7

Small nuclear ribonucleoprotein family protein

sm-like protein LSM7

LSM7-like

sm-like protein LSM7

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	13
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	4
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	7
gma03018	RNA degradation	3
gma03420	Nucleotide excision repair	3
gma04120	Ubiquitin mediated proteolysis	2
gma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03050	Proteasome	6
ppo03018	RNA degradation	3
ppo03040	Spliceosome	3
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	6
ppo03018	RNA degradation	4
ppo03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath03020	RNA polymerase	2
ath03420	Nucleotide excision repair	2
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	4
bra03040	Spliceosome	3
bra03018	RNA degradation	2
bra03060	Protein export	2
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	3
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	4
ghi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	6
ghi03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	6
bna03018	RNA degradation	2
bna03040	Spliceosome	2
bna00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	6
cit03018	RNA degradation	3
cit03040	Spliceosome	3
cit04122	Sulfur relay system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	4
sot03040	Spliceosome	3
sot03020	RNA polymerase	2
sot03420	Nucleotide excision repair	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	5
nta03018	RNA degradation	3
nta03010	Ribosome	2
nta03022	Basal transcription factors	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	7
nta03018	RNA degradation	5
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	2
osa03040	Spliceosome	2
osa03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	2
zma03020	RNA polymerase	2
zma03420	Nucleotide excision repair	2
zma03018	RNA degradation	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	4
tae03040	Spliceosome	4
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	3
tae03040	Spliceosome	3
tae03020	RNA polymerase	2
tae03420	Nucleotide excision repair	2
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2
hvu03013	Nucleocytoplasmic transport	2
hvu03040	Spliceosome	2
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	12
hvu03040	Spliceosome	3
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03420	Nucleotide excision repair	6
sbi03020	RNA polymerase	5
sbi04141	Protein processing in endoplasmic reticulum	3
sbi03040	Spliceosome	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	11
cre03013	Nucleocytoplasmic transport	3
cre03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

11407370

25501029

100306498

7480092

7481998

814913

103875380

100855332

107918492

107926248

106389258

102624901

101258986

102580345

107784494

107765381

4344803

100285982

100282349

123161401

123047226

123410023

123428240

8077679

100841801

100846427

5729059

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 11407370 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11407370 (mtr-u.5 coexpression data)


Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	2	2	1	1	1	1	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11407370 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11407370 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**