ATTED-II : GeneCoexpression result

Species	Gene	Description
mtr-u.5	11411099	plant-specific TFIIB-related protein 1
mtr-r.5	11411099	plant-specific TFIIB-related protein 1
gma-u.5	102662353	plant-specific TFIIB-related protein 1
gma-u.5	100815371	plant-specific TFIIB-related protein 1
ppo-u.5	7473161	plant-specific TFIIB-related protein 1
ath-u.5	PBRP	plant-specific TFIIB-related protein
vvi-u.5	100256546	plant-specific TFIIB-related protein 1
sly-u.5	101254048	transcription initiation factor IIB
osa-u.5	4331943	plant-specific TFIIB-related protein 1
zma-u.5	542022	uncharacterized LOC542022

functional annotation

KEGG

mtr03022 [list] [network] Basal transcription factors (52 genes)

GO BP

GO:0070897 [list] [network] transcription preinitiation complex assembly	(23 genes)	IEA
GO:0006352 [list] [network] DNA-templated transcription initiation	(78 genes)	IEA

GO CC

GO:0097550 [list] [network] transcription preinitiation complex	(9 genes)	IEA
GO:0005634 [list] [network] nucleus	(2707 genes)	IEA

GO MF

GO:0017025 [list] [network] TBP-class protein binding

(12 genes)

IEA

Protein

XP_003611972.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 4, chlo_mito 3

(predict for XP_003611972.1)

Subcellular
localization
TargetP

chlo 4

(predict for XP_003611972.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11411099	mtr-r.5 for 11411099	gma-u.5 for 102662353	gma-u.5 for 100815371	ppo-u.5 for 7473161	ath-u.5 for PBRP	vvi-u.5 for 100256546	sly-u.5 for 101254048	osa-u.5 for 4331943	zma-u.5 for 542022

Ortholog ID: 10905

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

PBRP

Function^*

plant-specific TFIIB-related protein 1

plant-specific TFIIB-related protein

plant-specific TFIIB-related protein 1

hypothetical protein

transcription initiation factor IIB

plant-specific TFIIB-related protein 1

uncharacterized LOC542022

plant-specific TFIIB-related protein 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	4
mtr00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	2
ppo01230	Biosynthesis of amino acids	2
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	3
ath03250	Viral life cycle - HIV-1	2
ath03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5
sly03420	Nucleotide excision repair	2
sly03013	Nucleocytoplasmic transport	2
sly03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03022	Basal transcription factors	2
zma03082	ATP-dependent chromatin remodeling	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03022	Basal transcription factors	3
tae04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03022	Basal transcription factors	3
tae04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01240	Biosynthesis of cofactors	3
hvu04712	Circadian rhythm - plant	2
hvu00740	Riboflavin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

11411099

100815371

102662353

7473161

829817

103862482

100256546

107913059

107896268

106451971

106410760

102620952

101254048

102599427

107765888

107781075

4331943

542022

123098395

123093125

123449434

8054252

100835667

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 11411099 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11411099 (mtr-u.5 coexpression data)


Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	2	2	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11411099 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11411099 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**