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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   11417846   polypyrimidine tract-binding protein homolog 3 
 mtr-r.5   11417846   polypyrimidine tract-binding protein homolog 3 
 mtr-m.5   11417846   polypyrimidine tract-binding protein homolog 3 
 mtr-u.5   25496157   polypyrimidine tract-binding protein homolog 3 
 mtr-u.5   11440579   polypyrimidine tract-binding protein homolog 3 
 gma-u.5   100819672   polypyrimidine tract-binding protein homolog 3-like 
 gma-u.5   100805732   polypyrimidine tract-binding protein homolog 3 
 gma-u.5   100798234   polypyrimidine tract-binding protein homolog 3 
 ppo-u.5   7492477   polypyrimidine tract-binding protein homolog 3 
 ppo-u.5   7467806   polypyrimidine tract-binding protein homolog 3 
 ath-u.5   PTB3   polypyrimidine tract-binding protein 3 
 vvi-u.5   100249160   polypyrimidine tract-binding protein homolog 3 
 vvi-u.5   100243429   polypyrimidine tract-binding protein homolog 3 
 sly-u.5   101245436   polypyrimidine tract-binding protein homolog 3 
 sly-u.5   101243754   polypyrimidine tract-binding protein homolog 3-like 
 osa-u.5   4338905   polypyrimidine tract-binding protein homolog 3 
 osa-u.5   4325048   polypyrimidine tract-binding protein homolog 3 
 zma-u.5   100383343   Polypyrimidine tract-binding protein homolog 3 
 zma-u.5   100383701   uncharacterized LOC100383701 

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Top 50 coexpressed genes to 11417846 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 11417846 (mtr-u.5 coexpression data)

CoexMap"11417846"


mtrLOC11417846 | Entrez gene ID : 11417846      
Species mtr gma ppo ath vvi sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 5 3 2 1 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006397 [list] [network] mRNA processing  (216 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2707 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1400 genes)  IEA  
Protein XP_003592082.1 [sequence] [blastp]
XP_024641996.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 1,  mito 1,  plas 1,  cysk 1,  cysk_plas 1,  mito_plas 1  (predict for XP_003592082.1)
cyto 6,  nucl 1,  mito 1,  plas 1,  cysk 1,  cysk_plas 1,  mito_plas 1  (predict for XP_024641996.1)
Subcellular
localization
TargetP
other 9  (predict for XP_003592082.1)
other 9  (predict for XP_024641996.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
11417846

.
mtr-r.5
for
11417846

.
mtr-m.5
for
11417846

.
mtr-u.5
for
25496157

.
mtr-u.5
for
11440579

.
gma-u.5
for
100819672

.
gma-u.5
for
100805732

.
gma-u.5
for
100798234

.
ppo-u.5
for
7492477

.
ppo-u.5
for
7467806

.
ath-u.5
for
PTB3

.
vvi-u.5
for
100249160

.
vvi-u.5
for
100243429

.
sly-u.5
for
101245436

.
sly-u.5
for
101243754

.
osa-u.5
for
4338905

.
osa-u.5
for
4325048

.
zma-u.5
for
100383343

.
zma-u.5
for
100383701

.


Ortholog ID: 5021
Species ath gma gma sly sly osa osa zma zma vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sot sot cit bdi bdi nta nta
Symbol PTB3 LOC100791570 LOC100798234 LOC101243754 LOC101245436 LOC4325048 LOC4338905 LOC100383343 LOC100383701 LOC100249160 LOC100243429 LOC7467806 LOC7492477 LOC25496157 LOC11440579 LOC123134734 LOC123071547 LOC123444795 LOC123446620 LOC107910463 LOC121214606 LOC106437680 LOC125591639 LOC8077166 PTB1 LOC102603741 LOC102620539 LOC100836949 LOC100824168 LOC107799898 LOC107772036
Function* polypyrimidine tract-binding protein 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3-like polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 Polypyrimidine tract-binding protein homolog 3 uncharacterized LOC100383701 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3-like polypyrimidine tract-binding protein homolog 3-like polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3-like polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3-like polypyrimidine tract-binding protein homolog 3-like polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 4
gma03050 Proteasome 3
gma04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00510 N-Glycan biosynthesis 3
osa00513 Various types of N-glycan biosynthesis 3
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03250 Viral life cycle - HIV-1 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 6
mtr00020 Citrate cycle (TCA cycle) 5
mtr00785 Lipoic acid metabolism 4
mtr01210 2-Oxocarboxylic acid metabolism 4
mtr00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 2
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03460 Fanconi anemia pathway 2
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 5
hvu00190 Oxidative phosphorylation 3
hvu04145 Phagosome 3
hvu04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 7
ghi03015 mRNA surveillance pathway 7
ghi03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 7
ghi03015 mRNA surveillance pathway 7
ghi03040 Spliceosome 7
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00062 Fatty acid elongation 2
bna01040 Biosynthesis of unsaturated fatty acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
bna03040 Spliceosome 2
bna03050 Proteasome 2
bna00062 Fatty acid elongation 2
bna01040 Biosynthesis of unsaturated fatty acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 7
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit03013 Nucleocytoplasmic transport 3
cit03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 8
bdi03015 mRNA surveillance pathway 2
bdi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 6
bdi03015 mRNA surveillance pathway 4
bdi03040 Spliceosome 3
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
nta03015 mRNA surveillance pathway 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 4
nta00900 Terpenoid backbone biosynthesis 2
nta04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 840918 100791570 100798234 101243754 101245436 4325048 4338905 100383343 100383701 100249160 100243429 7467806 7492477 25496157 11440579 123134734 123071547 123444795 123446620 107910463 121214606 106437680 125591639 8077166 102593799 102603741 102620539 100836949 100824168 107799898 107772036
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