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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   11420842   exosome complex component RRP43 
 mtr-r.5   11420842   exosome complex component RRP43 
 mtr-m.5   11420842   exosome complex component RRP43 
 gma-u.5   100812232   exosome complex component RRP43 
 gma-u.5   100776087   exosome complex component RRP43 
 ppo-u.5   7484014   uncharacterized LOC7484014 
 ppo-u.5   7473620   uncharacterized LOC7473620 
 ath-u.5   AT1G60080   3'-5'-exoribonuclease family protein 
 bra-r.6   103838559   exosome complex component RRP43 
 vvi-u.5   100253817   uncharacterized LOC100253817 
 ghi-r.1   107921769   exosome complex component RRP43 
 ghi-r.1   107934100   exosome complex component RRP43 
 ghi-r.1   107931625   exosome complex component RRP43 
 bna-r.1   106416653   exosome complex component RRP43 
 bna-r.1   106435838   exosome complex component RRP43 
 cit-r.1   102615861   uncharacterized LOC102615861 
 sly-u.5   101259053   uncharacterized LOC101259053 
 sot-r.1   102577904   3'-5'-exoribonuclease/RNA binding-like protein 
 sot-r.1   102577517   3'-5'-exoribonuclease/RNA binding protein-like protein 
 nta-r.1   107817577   uncharacterized LOC107817577 
 nta-r.1   107813495   uncharacterized LOC107813495 
 osa-u.5   4350355   uncharacterized LOC4350355 
 zma-u.5   100282327   exosome complex exonuclease RRP43 
 zma-u.5   100193137   exosome complex exonuclease RRP43 
 tae-r.2   123091107   exosome complex component RRP43 
 tae-r.2   123086873   exosome complex component RRP43 
 tae-r.2   123096109   exosome complex component RRP43 
 hvu-r.1   123447761   exosome complex component RRP43 
 sbi-r.1   8060942   exosome complex component RRP43 
 bdi-r.1   100834643   exosome complex component RRP43 
 cre-r.1   CHLRE_10g440900v5   uncharacterized protein 

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Top 50 coexpressed genes to 11420842 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 11420842 (mtr-u.5 coexpression data)

CoexMap"11420842"


mtrLOC11420842 | Entrez gene ID : 11420842      
Species mtr gma ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 2 2 1 1 1 3 2 1 1 2 2 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG mtr03018 [list] [network] RNA degradation (117 genes)
GO BP
GO:0034473 [list] [network] U1 snRNA 3'-end processing  (5 genes)  IEA  
GO:0034476 [list] [network] U5 snRNA 3'-end processing  (5 genes)  IEA  
GO:0000467 [list] [network] exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (11 genes)  IEA  
GO:0071028 [list] [network] nuclear mRNA surveillance  (11 genes)  IEA  
GO:0016075 [list] [network] rRNA catabolic process  (12 genes)  IEA  
GO:0034475 [list] [network] U4 snRNA 3'-end processing  (12 genes)  IEA  
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process  (12 genes)  IEA  
GO:0071038 [list] [network] TRAMP-dependent tRNA surveillance pathway  (12 genes)  IEA  
GO:0000288 [list] [network] nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay  (17 genes)  IEA  
GO CC
GO:0000177 [list] [network] cytoplasmic exosome (RNase complex)  (13 genes)  IEA  
GO:0000176 [list] [network] nuclear exosome (RNase complex)  (17 genes)  IEA  
GO MF
GO:0035925 [list] [network] mRNA 3'-UTR AU-rich region binding  (6 genes)  IEA  
Protein XP_003588420.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  plas 2,  cyto_pero 2,  cyto_E.R. 2  (predict for XP_003588420.2)
Subcellular
localization
TargetP
other 5  (predict for XP_003588420.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
11420842
mtr-r.5
for
11420842
mtr-m.5
for
11420842
gma-u.5
for
100812232
gma-u.5
for
100776087
ppo-u.5
for
7484014
ppo-u.5
for
7473620
ath-u.5
for
AT1G60080
bra-r.6
for
103838559
vvi-u.5
for
100253817
ghi-r.1
for
107921769
ghi-r.1
for
107934100
ghi-r.1
for
107931625
bna-r.1
for
106416653
bna-r.1
for
106435838
cit-r.1
for
102615861
sly-u.5
for
101259053
sot-r.1
for
102577904
sot-r.1
for
102577517
nta-r.1
for
107817577
nta-r.1
for
107813495
osa-u.5
for
4350355
zma-u.5
for
100282327
zma-u.5
for
100193137
tae-r.2
for
123091107
tae-r.2
for
123086873
tae-r.2
for
123096109
hvu-r.1
for
123447761
sbi-r.1
for
8060942
bdi-r.1
for
100834643
cre-r.1
for
CHLRE_10g440900v5


Ortholog ID: 7080
Species mtr gma gma ppo ppo ath bra vvi ghi ghi ghi bna bna cit sly sot sot nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC11420842 LOC100812232 LOC100776087 LOC7484014 LOC7473620 AT1G60080 LOC103838559 LOC100253817 LOC107921769 LOC107934100 LOC107928852 LOC106416653 LOC106435838 LOC102615861 LOC101259053 LOC102577904 LOC102577517 LOC107817577 LOC107813495 LOC4350355 LOC100282327 LOC100193137 LOC123091107 LOC123086873 LOC123096109 LOC123447761 LOC8060942 LOC100834643 CHLRE_10g440900v5
Function* exosome complex component RRP43 exosome complex component RRP43 exosome complex component RRP43 uncharacterized LOC7484014 uncharacterized LOC7473620 3'-5'-exoribonuclease family protein exosome complex component RRP43 uncharacterized LOC100253817 exosome complex component RRP43 exosome complex component RRP43 exosome complex component RRP43 exosome complex component RRP43 exosome complex component RRP43 uncharacterized LOC102615861 uncharacterized LOC101259053 3'-5'-exoribonuclease/RNA binding-like protein 3'-5'-exoribonuclease/RNA binding protein-like protein uncharacterized LOC107817577 uncharacterized LOC107813495 uncharacterized LOC4350355 exosome complex exonuclease RRP43 exosome complex exonuclease RRP43 exosome complex component RRP43 exosome complex component RRP43 exosome complex component RRP43 exosome complex component RRP43 exosome complex component RRP43 exosome complex component RRP43 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 6
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 3
ath03008 Ribosome biogenesis in eukaryotes 2
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
vvi03060 Protein export 2
vvi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03010 Ribosome 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 3
sot04120 Ubiquitin mediated proteolysis 2
sot03010 Ribosome 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 4
nta03040 Spliceosome 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 5
zma03015 mRNA surveillance pathway 4
zma01230 Biosynthesis of amino acids 4
zma00970 Aminoacyl-tRNA biosynthesis 3
zma00220 Arginine biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae03022 Basal transcription factors 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03018 RNA degradation 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 4
hvu01210 2-Oxocarboxylic acid metabolism 2
hvu04146 Peroxisome 2
hvu00261 Monobactam biosynthesis 2
hvu00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 6
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 6
cre03018 RNA degradation 2
cre03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 11420842 100812232 100776087 7484014 7473620 842303 103838559 100253817 107921769 107934100 107928852 106416653 106435838 102615861 101259053 102577904 102577517 107817577 107813495 4350355 100282327 100193137 123091107 123086873 123096109 123447761 8060942 100834643 5716159
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