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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   11421475   DNA topoisomerase 6 subunit B 
 mtr-r.5   11421475   DNA topoisomerase 6 subunit B 
 mtr-m.5   11421475   DNA topoisomerase 6 subunit B 
 gma-u.5   100809558   DNA topoisomerase 6 subunit B 
 ppo-u.5   18097264   DNA topoisomerase 6 subunit B 
 ath-u.5   TOP6B   topoisomerase 6 subunit B 
 vvi-u.5   100265632   DNA topoisomerase 6 subunit B 
 sly-u.5   101263928   DNA topoisomerase 6 subunit B 
 osa-u.5   TOP6B   DNA topoisomerase 6 subunit B-like 
 zma-u.5   103632502   DNA topoisomerase 6 subunit B 

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Top 50 coexpressed genes to 11421475 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 11421475 (mtr-u.5 coexpression data)

CoexMap"11421475"


mtrLOC11421475 | Entrez gene ID : 11421475      
Species mtr gma ppo ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006265 [list] [network] DNA topological change  (18 genes)  IEA  
GO CC
GO MF
GO:0003918 [list] [network] DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity  (13 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2104 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2502 genes)  IEA  
Protein XP_003597480.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 3  (predict for XP_003597480.1)
Subcellular
localization
TargetP
other 8,  chlo 4  (predict for XP_003597480.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
11421475

.
mtr-r.5
for
11421475

.
mtr-m.5
for
11421475

.
gma-u.5
for
100809558

.
ppo-u.5
for
18097264

.
ath-u.5
for
TOP6B

.
vvi-u.5
for
100265632

.
sly-u.5
for
101263928

.
osa-u.5
for
TOP6B

.
zma-u.5
for
103632502

.


Ortholog ID: 9498
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol TOP6B LOC100809558 LOC101263928 TOP6B LOC103632502 LOC103869277 LOC100265632 LOC18097264 LOC11421475 LOC123120981 LOC123103413 LOC123394977 LOC121225308 LOC107945355 LOC106345840 LOC125594253 CHLRE_01g019750v5 LOC8062034 LOC102592185 LOC102615212 LOC100844704 LOC107763714 LOC107815486
Function* topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B-like DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B uncharacterized protein DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B DNA topoisomerase 6 subunit B-like DNA topoisomerase 6 subunit B
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03083 Polycomb repressive complex 2
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00270 Cysteine and methionine metabolism 2
zma03082 ATP-dependent chromatin remodeling 2
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 4
ppo03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
mtr03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae03015 mRNA surveillance pathway 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 7
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 5
ghi03410 Base excision repair 3
ghi03420 Nucleotide excision repair 3
ghi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 3
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00260 Glycine, serine and threonine metabolism 2
sot00470 D-Amino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03083 Polycomb repressive complex 2
bdi03020 RNA polymerase 2
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 3
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
nta03250 Viral life cycle - HIV-1 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821626 100809558 101263928 4346606 103632502 103869277 100265632 18097264 11421475 123120981 123103413 123394977 121225308 107945355 106345840 125594253 5715184 8062034 102592185 102615212 100844704 107763714 107815486
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